Variant report

Variant	rs61903321
Chromosome Location	chr11:56427467-56427468
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:27)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:27 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BCL11A	chr11:56427166-56427558	H1-hESC	embryonic stem cell:	n/a	n/a
2	TCF12	chr11:56427284-56427470	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr11:56427334-56427828	H1-hESC	embryonic stem cell:	n/a	n/a
4	SP1	chr11:56427096-56427691	H1-hESC	embryonic stem cell:	n/a	n/a
5	NANOG	chr11:56427176-56427683	H1-hESC	embryonic stem cell:	n/a	chr11:56427430-56427444
6	TEAD4	chr11:56427130-56427733	H1-hESC	embryonic stem cell:	n/a	n/a
7	BCL11A	chr11:56427204-56427533	H1-hESC	embryonic stem cell:	n/a	n/a
8	MAX	chr11:56427171-56427773	H1-hESC	embryonic stem cell:	n/a	n/a
9	SP1	chr11:56427110-56427619	H1-hESC	embryonic stem cell:	n/a	n/a
10	CREB1	chr11:56427178-56427725	H1-hESC	embryonic stem cell:	n/a	n/a
11	POLR2A	chr11:56427348-56427660	H1-hESC	embryonic stem cell:	n/a	n/a
12	EP300	chr11:56427090-56427691	H1-hESC	embryonic stem cell:	n/a	n/a
13	POLR2A	chr11:56427233-56427841	H1-hESC	embryonic stem cell:	n/a	n/a
14	NANOG	chr11:56427113-56427589	H1-hESC	embryonic stem cell:	n/a	chr11:56427430-56427444
15	TEAD4	chr11:56427184-56427678	H1-hESC	embryonic stem cell:	n/a	n/a
16	ATF2	chr11:56427149-56427629	H1-hESC	embryonic stem cell:	n/a	n/a
17	JUND	chr11:56427188-56427606	H1-hESC	embryonic stem cell:	n/a	n/a
18	TCF12	chr11:56427198-56427522	H1-hESC	embryonic stem cell:	n/a	n/a
19	TAF1	chr11:56427306-56427780	H1-hESC	embryonic stem cell:	n/a	n/a
20	POLR2A	chr11:56427420-56427742	H1-hESC	embryonic stem cell:	n/a	n/a
21	GTF2F1	chr11:56427341-56427654	H1-hESC	embryonic stem cell:	n/a	n/a
22	POU5F1	chr11:56427154-56427745	H1-hESC	embryonic stem cell:	n/a	n/a
23	HDAC2	chr11:56427184-56427766	H1-hESC	embryonic stem cell:	n/a	chr11:56427361-56427375
24	POLR2A	chr11:56427215-56427889	H1-hESC	embryonic stem cell:	n/a	n/a
25	RAD21	chr11:56427418-56427838	H1-hESC	embryonic stem cell:	n/a	n/a
26	EP300	chr11:56427188-56427604	H1-hESC	embryonic stem cell:	n/a	n/a
27	ATF2	chr11:56427208-56427626	H1-hESC	embryonic stem cell:	n/a	n/a

No data

Variant related genes	Relation type
OR5AR1	TF binding region

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10501355	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17546536	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17548679	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17548700	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17549606	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17628586	0.84[EUR][1000 genomes]
rs17628691	0.84[EUR][1000 genomes]
rs17629033	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17629218	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1807254	0.84[EUR][1000 genomes]
rs55771448	0.84[EUR][1000 genomes]
rs55874240	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56078926	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56163075	0.82[EUR][1000 genomes]
rs61902171	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61902203	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61902209	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61902883	0.84[EUR][1000 genomes]
rs61902885	0.84[EUR][1000 genomes]
rs61902915	0.84[EUR][1000 genomes]
rs61902916	0.84[EUR][1000 genomes]
rs61902921	0.84[EUR][1000 genomes]
rs61903268	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61903273	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61903306	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61903313	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61903315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61903316	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61903320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61903347	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61904062	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61904063	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61904064	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61904562	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61904563	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61904564	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61904565	0.92[EUR][1000 genomes]
rs61904579	0.83[AMR][1000 genomes]
rs61904584	0.83[AMR][1000 genomes]
rs61904586	0.83[AMR][1000 genomes]
rs6591380	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7114870	0.82[EUR][1000 genomes]
rs7121991	0.84[EUR][1000 genomes]
rs7130906	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7939771	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050024	chr11:55900482-56518943	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases
2	nsv497854	chr11:55917298-56537994	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
3	nsv971952	chr11:56361311-56452186	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv949349	chr11:56371633-56593610	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
5	nsv1051853	chr11:56393347-56523720	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56426600-56428000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:56427000-56427600	Active TSS	HUES6 Cell Line	embryonic stem cell
3	chr11:56427000-56427600	Active TSS	iPS-20b Cell Line	embryonic stem cell
4	chr11:56427000-56427800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:56427200-56427600	Active TSS	H1 Cell Line	embryonic stem cell
6	chr11:56427200-56427600	Active TSS	HUES48 Cell Line	embryonic stem cell
7	chr11:56427200-56427600	Active TSS	HUES64 Cell Line	embryonic stem cell
8	chr11:56427200-56427600	Active TSS	iPS-18 Cell Line	embryonic stem cell
9	chr11:56427400-56427800	Active TSS	ES-I3 Cell Line	embryonic stem cell
10	chr11:56427400-56427800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:56427400-56427800	Active TSS	H9 Cell Line	embryonic stem cell
12	chr11:56427400-56428000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr11:56427400-56428000	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell

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