Variant report

Variant	rs61904563
Chromosome Location	chr11:56466579-56466580
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:56466578-56466628	NH-A	brain:	n/a
2	chr11:56466578-56466628	HRCEpiC	kidney:	n/a
3	chr11:56466578-56466628	HIPEpiC	eye:	n/a
4	chr11:56466578-56466628	AoSMC	blood vessel:	n/a
5	chr11:56466578-56466628	T-47D	breast:	n/a
6	chr11:56466578-56466628	Jurkat	blood:	n/a
7	chr11:56466578-56466628	GM19239	blood:	n/a
8	chr11:56466578-56466628	HRE	kidney:	n/a
9	chr11:56466578-56466628	ProgFib	skin:	n/a
10	chr11:56466578-56466628	NT2-D1	testis:	n/a
11	chr11:56466578-56466628	H1-hESC	embryonic stem cell:	embryo
12	chr11:56466578-56466628	K562	blood:	n/a
13	chr11:56466578-56466628	PrEC	prostate:	n/a
14	chr11:56466578-56466628	LNCaP	prostate:	n/a
15	chr11:56466578-56466628	SK-N-SH_RA	brain:	n/a
16	chr11:56466578-56466628	MCF-7	breast:	n/a
17	chr11:56466578-56466628	AG10803	skin:	n/a
18	chr11:56466578-56466628	Caco-2	colon:	n/a
19	chr11:56466578-56466628	CMK	blood:	n/a
20	chr11:56466578-56466628	SKMC	muscle:	n/a
21	chr11:56466578-56466628	HL-60	blood:	n/a
22	chr11:56466578-56466628	U87	brain:	n/a
23	chr11:56466578-56466628	ovcar-3	ovarian:	n/a
24	chr11:56466578-56466628	NB4	blood:	n/a
25	chr11:56466578-56466628	ECC-1	luminal epithelium:	n/a
26	chr11:56466578-56466628	GM06990	blood:	n/a
27	chr11:56466578-56466628	BE2_C	brain:	n/a
28	chr11:56466578-56466628	SAEC	small airway:	n/a
29	chr11:56466578-56466628	IMR90	lung:	fetal
30	chr11:56466578-56466628	AG09309	skin:	n/a
31	chr11:56466578-56466628	HMEC	breast:	n/a
32	chr11:56466578-56466628	GM12892	blood:	n/a
33	chr11:56466578-56466628	AG04449	skin:	fetal
34	chr11:56466578-56466628	HEK293	kidney:	embryo
35	chr11:56466578-56466628	PANC-1	pancreas:	n/a
36	chr11:56466578-56466628	HCF	heart:	n/a
37	chr11:56466578-56466628	SK-N-SH	brain:	n/a
38	chr11:56466578-56466628	HRPEpiC	eye:	n/a
39	chr11:56466578-56466628	Hela-S3	cervix:	n/a
40	chr11:56466578-56466628	Hepatocyte	liver:	n/a
41	chr11:56466578-56466628	SK-N-MC	brain:	n/a
42	chr11:56466578-56466628	PFSK-1	brain:	n/a
43	chr11:56466578-56466628	RPTEC	kidney:	n/a
44	chr11:56466578-56466628	HPAEpiC	pulmonary alveolar:	n/a
45	chr11:56466578-56466628	HUVEC	blood vessel:	n/a
46	chr11:56466578-56466628	GM12891	blood:	n/a
47	chr11:56466578-56466628	HCM	heart:	n/a
48	chr11:56466578-56466628	BJ	skin:	n/a
49	chr11:56466578-56466628	AG04450	lung:	fetal
50	chr11:56466578-56466628	GM12878	blood:	n/a

No data

Variant related genes	Relation type
OR9G1	CpG island

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10501355	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17546536	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17548679	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17548700	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17549606	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17629033	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17629218	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs55874240	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56078926	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56394926	1.00[AFR][1000 genomes]
rs61902171	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61902203	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61902209	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61902501	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs61902503	1.00[AFR][1000 genomes]
rs61902504	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs61902921	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs61903268	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61903273	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61903306	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61903313	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61903315	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61903316	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61903320	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61903321	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61903347	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61904062	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61904063	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs61904064	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61904562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61904564	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61904565	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61904579	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs61904584	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs61904586	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs61904587	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6591380	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7114870	1.00[AFR][1000 genomes]
rs7130906	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7939771	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050024	chr11:55900482-56518943	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases
2	nsv497854	chr11:55917298-56537994	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
3	nsv949349	chr11:56371633-56593610	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv1051853	chr11:56393347-56523720	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
5	nsv975115	chr11:56460276-56468712	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56463400-56468200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:56464000-56467400	Weak transcription	Dnd41	blood
3	chr11:56465200-56467800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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