Variant report

Variant	rs61904564
Chromosome Location	chr11:56467490-56467491
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10501355	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17546536	0.87[AMR][1000 genomes]
rs17548679	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17548700	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17549606	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17629033	0.87[AMR][1000 genomes]
rs17629218	0.87[AMR][1000 genomes]
rs55874240	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56078926	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs56394926	1.00[AFR][1000 genomes]
rs61902171	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61902203	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61902209	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61902501	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs61902503	1.00[AFR][1000 genomes]
rs61902504	1.00[AFR][1000 genomes]
rs61902921	1.00[AFR][1000 genomes]
rs61903268	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61903273	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61903306	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61903313	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61903315	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61903316	0.92[EUR][1000 genomes]
rs61903320	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61903321	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61903347	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61904062	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs61904063	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61904064	0.87[AMR][1000 genomes]
rs61904562	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61904563	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61904565	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61904579	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs61904584	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs61904586	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs61904587	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6591380	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7114870	1.00[AFR][1000 genomes]
rs7130906	0.87[AMR][1000 genomes]
rs7939771	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050024	chr11:55900482-56518943	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases
2	nsv497854	chr11:55917298-56537994	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
3	nsv949349	chr11:56371633-56593610	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv1051853	chr11:56393347-56523720	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
5	nsv975115	chr11:56460276-56468712	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56463400-56468200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:56465200-56467800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr11:56467400-56468200	Enhancers	Dnd41	blood

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