Variant report

Variant	rs61904584
Chromosome Location	chr11:56483121-56483122
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10501355	0.83[AMR][1000 genomes]
rs17548679	0.83[AMR][1000 genomes]
rs17548700	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs17549606	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs55874240	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs56078926	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs61889065	0.80[EUR][1000 genomes]
rs61902171	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs61902203	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs61902209	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs61902501	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61902503	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61902504	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61902517	0.87[EUR][1000 genomes]
rs61902556	0.80[EUR][1000 genomes]
rs61903268	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs61903273	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs61903306	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs61903313	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs61903315	0.83[AMR][1000 genomes]
rs61903320	0.83[AMR][1000 genomes]
rs61903321	0.83[AMR][1000 genomes]
rs61903347	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs61904064	0.88[AMR][1000 genomes]
rs61904562	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs61904563	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs61904564	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs61904565	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs61904579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61904586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61904587	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6591380	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs7114870	1.00[AFR][1000 genomes]
rs7939771	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050024	chr11:55900482-56518943	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases
2	nsv497854	chr11:55917298-56537994	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
3	nsv949349	chr11:56371633-56593610	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv1051853	chr11:56393347-56523720	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
5	esv7703	chr11:56467760-56508007	Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv3431554	chr11:56467767-56507904	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	esv3422861	chr11:56467922-56507848	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv3512486	chr11:56467938-56507830	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv3512487	chr11:56467938-56507830	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv3413940	chr11:56467952-56507880	Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv1048328	chr11:56471984-56649908	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
12	esv2830406	chr11:56481955-56650124	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
13	nsv983168	chr11:56482140-56491125	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56482200-56484000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:56482600-56483400	Weak transcription	Dnd41	blood

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