Variant report

Variant	rs61916289
Chromosome Location	chr11:55274279-55274280
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 126 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs10501336	1.00[EUR][1000 genomes]
rs11823375	0.96[AFR][1000 genomes]
rs11823401	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11825893	0.96[AFR][1000 genomes]
rs11826463	0.96[AFR][1000 genomes]
rs11827117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11827472	0.82[AFR][1000 genomes]
rs11828046	0.96[AFR][1000 genomes]
rs11828727	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1230338	1.00[AMR][1000 genomes]
rs17157667	0.82[AFR][1000 genomes]
rs17158644	0.96[AFR][1000 genomes]
rs17159161	0.96[AFR][1000 genomes]
rs17494536	0.95[EUR][1000 genomes]
rs17494990	1.00[EUR][1000 genomes]
rs17496160	1.00[EUR][1000 genomes]
rs17579334	0.95[EUR][1000 genomes]
rs17579348	0.95[EUR][1000 genomes]
rs17579755	1.00[EUR][1000 genomes]
rs17579825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17580966	1.00[EUR][1000 genomes]
rs17580994	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17581051	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17581261	1.00[EUR][1000 genomes]
rs17582140	1.00[EUR][1000 genomes]
rs2169004	0.95[EUR][1000 genomes]
rs488213	0.97[EUR][1000 genomes]
rs492647	0.93[EUR][1000 genomes]
rs505338	1.00[EUR][1000 genomes]
rs530679	0.97[EUR][1000 genomes]
rs548768	0.97[EUR][1000 genomes]
rs55770365	1.00[EUR][1000 genomes]
rs55972122	1.00[EUR][1000 genomes]
rs56045005	0.95[EUR][1000 genomes]
rs56063922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56333107	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61895192	1.00[EUR][1000 genomes]
rs61895193	1.00[EUR][1000 genomes]
rs61895194	0.97[EUR][1000 genomes]
rs61916282	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61916283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61916284	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61916285	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61916286	1.00[EUR][1000 genomes]
rs61916290	1.00[EUR][1000 genomes]
rs61916319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61916320	1.00[EUR][1000 genomes]
rs61916321	1.00[EUR][1000 genomes]
rs61916328	1.00[EUR][1000 genomes]
rs61916398	0.80[EUR][1000 genomes]
rs61916400	0.80[EUR][1000 genomes]
rs61916402	0.80[EUR][1000 genomes]
rs61916403	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61916404	0.80[EUR][1000 genomes]
rs61916405	0.80[EUR][1000 genomes]
rs61916412	0.80[EUR][1000 genomes]
rs61916413	0.80[EUR][1000 genomes]
rs61916455	0.95[EUR][1000 genomes]
rs61916565	1.00[EUR][1000 genomes]
rs61917396	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61917432	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61917433	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61917939	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61917940	1.00[EUR][1000 genomes]
rs61917941	1.00[EUR][1000 genomes]
rs61917942	1.00[EUR][1000 genomes]
rs61917986	0.95[EUR][1000 genomes]
rs61917987	0.95[EUR][1000 genomes]
rs61917988	0.95[EUR][1000 genomes]
rs61917989	0.95[EUR][1000 genomes]
rs61917998	0.95[EUR][1000 genomes]
rs61918221	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61919565	1.00[EUR][1000 genomes]
rs7103342	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7106100	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7109287	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7110861	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7111663	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7111681	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7115527	1.00[EUR][1000 genomes]
rs7119347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7121555	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7924882	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7929606	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7930341	1.00[EUR][1000 genomes]
rs7940290	1.00[EUR][1000 genomes]
rs7940305	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7940435	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7940928	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7941275	1.00[EUR][1000 genomes]
rs7941839	1.00[EUR][1000 genomes]
rs7941860	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7943036	1.00[AMR][1000 genomes]
rs7943092	0.95[EUR][1000 genomes]
rs7948802	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7950685	0.95[EUR][1000 genomes]
rs7950755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7950956	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9666121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9666260	1.00[EUR][1000 genomes]
rs9666744	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9667732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs982276	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830215	chr11:54711990-55340379	ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1052144	chr11:54720811-55438474	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv1053949	chr11:54773881-55363328	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	nsv1051643	chr11:54826801-55363328	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	nsv524091	chr11:54875038-55522549	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
6	nsv554797	chr11:55035411-55864161	Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
7	nsv975110	chr11:55076487-55318108	ZNF genes & repeats Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	17 gene(s)	inside rSNPs	diseases
8	nsv467886	chr11:55083434-55408700	Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
9	nsv554799	chr11:55083434-55408700	Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
10	nsv554800	chr11:55083434-55695985	ZNF genes & repeats Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
11	nsv916012	chr11:55084067-55622531	ZNF genes & repeats Active TSS Weak transcription Bivalent Enhancer Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
12	nsv1067779	chr11:55086995-55980406	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
13	nsv491694	chr11:55086995-55980406	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
14	nsv1036325	chr11:55119267-55442306	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island	19 gene(s)	inside rSNPs	diseases
15	esv2751031	chr11:55121706-55340753	Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription	TF binding region CpG island	14 gene(s)	inside rSNPs	diseases
16	nsv821668	chr11:55153930-55816828	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
17	nsv518225	chr11:55171677-55408700	ZNF genes & repeats Active TSS Bivalent Enhancer Weak transcription Enhancers	TF binding region CpG island	14 gene(s)	inside rSNPs	diseases
18	esv2758271	chr11:55222420-55621884	Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
19	esv2759828	chr11:55222420-55638112	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
20	nsv832154	chr11:55222427-55408933	Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription	TF binding region CpG island	10 gene(s)	inside rSNPs	diseases
21	nsv1042532	chr11:55233539-55279921	ZNF genes & repeats Weak transcription	TF binding region	5 gene(s)	inside rSNPs	diseases
22	nsv1046475	chr11:55241003-55381810	ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription Enhancers	TF binding region CpG island	8 gene(s)	inside rSNPs	diseases
23	nsv1047882	chr11:55241003-55386385	Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region CpG island	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:55269600-55277400	Weak transcription	Pancreas	Pancrea

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