Variant report

Variant	rs61918407
Chromosome Location	chr11:55107504-55107505
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr11:55107496-55107675	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
OR4A16	TF binding region

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs11821230	0.93[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs1230338	0.85[EUR][1000 genomes]
rs1425195	0.88[EUR][1000 genomes]
rs17493401	0.81[EUR][1000 genomes]
rs55721957	0.97[EUR][1000 genomes]
rs55735728	0.95[EUR][1000 genomes]
rs55817673	0.83[EUR][1000 genomes]
rs55900934	0.95[EUR][1000 genomes]
rs56068831	0.93[EUR][1000 genomes]
rs56198863	0.95[EUR][1000 genomes]
rs56229188	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61894885	0.93[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs61894907	0.95[EUR][1000 genomes]
rs61894909	0.92[EUR][1000 genomes]
rs61894947	0.95[EUR][1000 genomes]
rs61894948	0.95[EUR][1000 genomes]
rs61894949	0.85[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs61894951	0.95[EUR][1000 genomes]
rs61894952	0.95[EUR][1000 genomes]
rs61894957	0.85[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs61894958	0.85[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs61895962	0.95[EUR][1000 genomes]
rs61895984	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs61896021	0.93[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs61896024	0.93[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs61897515	0.80[EUR][1000 genomes]
rs61897516	0.80[EUR][1000 genomes]
rs61898393	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs61898412	0.88[EUR][1000 genomes]
rs61898413	0.83[AFR][1000 genomes]
rs61898414	0.80[EUR][1000 genomes]
rs61916169	0.80[EUR][1000 genomes]
rs61916170	0.80[EUR][1000 genomes]
rs61916171	0.80[EUR][1000 genomes]
rs61916176	0.80[EUR][1000 genomes]
rs61916398	0.85[EUR][1000 genomes]
rs61917396	0.80[EUR][1000 genomes]
rs61917397	0.80[EUR][1000 genomes]
rs61917399	0.80[EUR][1000 genomes]
rs61917402	0.85[EUR][1000 genomes]
rs61917403	0.85[EUR][1000 genomes]
rs61917404	0.85[EUR][1000 genomes]
rs61917431	0.85[EUR][1000 genomes]
rs61917432	0.85[EUR][1000 genomes]
rs61917433	0.85[EUR][1000 genomes]
rs61917435	0.85[EUR][1000 genomes]
rs61918221	0.90[EUR][1000 genomes]
rs61918237	0.90[EUR][1000 genomes]
rs61918388	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6591332	0.90[EUR][1000 genomes]
rs7114379	0.90[EUR][1000 genomes]
rs7114530	0.87[EUR][1000 genomes]
rs7120226	0.90[EUR][1000 genomes]
rs7121804	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7925927	0.85[EUR][1000 genomes]
rs7943036	0.85[EUR][1000 genomes]
rs7943624	0.97[EUR][1000 genomes]
rs7943639	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7951955	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:36 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv554618	chr11:54695707-55111584	ZNF genes & repeats Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2830215	chr11:54711990-55340379	ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv1048402	chr11:54720811-55148163	Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1039155	chr11:54720811-55156607	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1042875	chr11:54720811-55191418	ZNF genes & repeats Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv1038336	chr11:54720811-55213281	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv1052144	chr11:54720811-55438474	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
8	nsv1053949	chr11:54773881-55363328	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
9	nsv1051643	chr11:54826801-55363328	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
10	nsv524091	chr11:54875038-55522549	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
11	nsv1054262	chr11:55030215-55146638	Weak transcription ZNF genes & repeats Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	nsv554797	chr11:55035411-55864161	Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
13	nsv1042158	chr11:55045843-55121390	Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
14	nsv1054854	chr11:55045843-55121706	ZNF genes & repeats Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
15	nsv1047317	chr11:55045843-55132783	Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
16	esv2760193	chr11:55045855-55121706	ZNF genes & repeats Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
17	nsv1042642	chr11:55050890-55121706	Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
18	nsv1050431	chr11:55065048-55148163	ZNF genes & repeats Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
19	nsv832153	chr11:55068335-55242831	ZNF genes & repeats Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
20	nsv1053286	chr11:55069566-55126589	ZNF genes & repeats Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
21	nsv1051199	chr11:55074969-55261905	Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
22	nsv975110	chr11:55076487-55318108	ZNF genes & repeats Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	17 gene(s)	inside rSNPs	diseases
23	nsv522655	chr11:55083434-55156434	Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
24	nsv528911	chr11:55083434-55156434	ZNF genes & repeats Enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
25	nsv554798	chr11:55083434-55156434	Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
26	nsv467886	chr11:55083434-55408700	Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
27	nsv554799	chr11:55083434-55408700	Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
28	nsv554800	chr11:55083434-55695985	ZNF genes & repeats Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
29	nsv916012	chr11:55084067-55622531	ZNF genes & repeats Active TSS Weak transcription Bivalent Enhancer Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
30	esv3387641	chr11:55084684-55196590	Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
31	esv3328290	chr11:55084699-55196666	Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
32	esv3342341	chr11:55084713-55196631	ZNF genes & repeats Enhancers	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
33	esv998925	chr11:55084765-55196478	Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
34	nsv1067779	chr11:55086995-55980406	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
35	nsv491694	chr11:55086995-55980406	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
36	nsv825891	chr11:55092866-55148407	Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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