Variant report

Variant	rs61919551
Chromosome Location	chr12:63104260-63104261
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:62996315..62998062-chr12:63103947..63105893,2	K562	blood:
2	chr12:62995443..62998062-chr12:63103947..63105976,2	K562	blood:

Variant related genes	Relation type
ENSG00000221949	Chromatin interaction
ENSG00000199179	Chromatin interaction
ENSG00000257354	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11174620	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13313182	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17733673	0.84[EUR][1000 genomes]
rs17733713	0.85[EUR][1000 genomes]
rs17733777	0.87[EUR][1000 genomes]
rs57941935	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7135080	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63067400-63116800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr12:63078000-63118600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr12:63087200-63113600	Weak transcription	Liver	Liver
4	chr12:63096600-63157000	Weak transcription	Pancreas	Pancrea
5	chr12:63097000-63105600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr12:63097000-63118800	Weak transcription	Stomach Mucosa	stomach
7	chr12:63097400-63105200	Weak transcription	Fetal Kidney	kidney
8	chr12:63097600-63104400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr12:63097600-63105000	Weak transcription	Colon Smooth Muscle	Colon
10	chr12:63097600-63109400	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr12:63097600-63109400	Weak transcription	Fetal Intestine Large	intestine
12	chr12:63097800-63104800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr12:63097800-63108400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr12:63097800-63111600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr12:63097800-63114400	Weak transcription	Aorta	Aorta
16	chr12:63098000-63105200	Weak transcription	Fetal Brain Male	brain
17	chr12:63098000-63107000	Weak transcription	Brain Anterior Caudate	brain
18	chr12:63098200-63104400	Weak transcription	Fetal Muscle Trunk	muscle
19	chr12:63098200-63107800	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr12:63098200-63108400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr12:63098600-63105000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr12:63098600-63105400	Weak transcription	Stomach Smooth Muscle	stomach
23	chr12:63098600-63108200	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr12:63098600-63115600	Strong transcription	HepG2	liver
25	chr12:63099000-63108200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr12:63099200-63105000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr12:63099400-63108600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr12:63100200-63108200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr12:63101200-63105600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr12:63102200-63105800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr12:63102200-63106400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr12:63102200-63106800	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr12:63102400-63107200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr12:63102800-63107000	Weak transcription	Brain Angular Gyrus	brain
35	chr12:63102800-63108200	Enhancers	A549	lung
36	chr12:63103000-63104400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr12:63103000-63108400	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr12:63103000-63108400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr12:63103000-63112800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr12:63103200-63104400	Enhancers	Primary monocytes fromperipheralblood	blood
41	chr12:63103200-63105400	Weak transcription	Brain Hippocampus Middle	brain
42	chr12:63103200-63105400	Weak transcription	Brain Substantia Nigra	brain
43	chr12:63103200-63105600	Weak transcription	Adipose Nuclei	Adipose
44	chr12:63103200-63105600	Weak transcription	Brain Cingulate Gyrus	brain
45	chr12:63103200-63105600	Weak transcription	Fetal Lung	lung
46	chr12:63103200-63107600	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr12:63103200-63108400	Weak transcription	Right Atrium	heart
48	chr12:63103200-63112800	Weak transcription	Primary hematopoietic stem cells	blood
49	chr12:63103200-63114400	Weak transcription	Right Ventricle	heart
50	chr12:63103400-63104400	Weak transcription	Fetal Thymus	thymus

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