Variant report

Variant	rs61919555
Chromosome Location	chr12:63108732-63108733
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:63107577..63110076-chr12:63187039..63189905,2	MCF-7	breast:
2	chr12:62995187..62997720-chr12:63107068..63109801,3	K562	blood:
3	chr12:63106698..63109558-chr12:63117720..63119992,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000199179	Chromatin interaction
ENSG00000257354	Chromatin interaction
ENSG00000221949	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17733673	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17733713	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17733777	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17734018	0.91[ASN][1000 genomes]
rs57163227	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63067400-63116800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr12:63078000-63118600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr12:63087200-63113600	Weak transcription	Liver	Liver
4	chr12:63096600-63157000	Weak transcription	Pancreas	Pancrea
5	chr12:63097000-63118800	Weak transcription	Stomach Mucosa	stomach
6	chr12:63097600-63109400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr12:63097600-63109400	Weak transcription	Fetal Intestine Large	intestine
8	chr12:63097800-63111600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr12:63097800-63114400	Weak transcription	Aorta	Aorta
10	chr12:63098600-63115600	Strong transcription	HepG2	liver
11	chr12:63103000-63112800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr12:63103200-63112800	Weak transcription	Primary hematopoietic stem cells	blood
13	chr12:63103200-63114400	Weak transcription	Right Ventricle	heart
14	chr12:63103400-63108800	Weak transcription	Left Ventricle	heart
15	chr12:63103400-63118800	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr12:63103800-63112400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr12:63104000-63112000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr12:63104200-63109600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr12:63104400-63108800	Enhancers	Fetal Thymus	thymus
20	chr12:63104400-63118800	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr12:63104600-63109800	Enhancers	Fetal Stomach	stomach
22	chr12:63104800-63112000	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr12:63105000-63110000	Enhancers	Fetal Muscle Leg	muscle
24	chr12:63105000-63111200	Enhancers	Colon Smooth Muscle	Colon
25	chr12:63105200-63110000	Enhancers	Fetal Brain Male	brain
26	chr12:63105400-63108800	Enhancers	Stomach Smooth Muscle	stomach
27	chr12:63105400-63110000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr12:63105400-63115200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr12:63105600-63109600	Enhancers	Adipose Nuclei	Adipose
30	chr12:63105600-63109800	Enhancers	NHDF-Ad	bronchial
31	chr12:63105800-63114600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr12:63106000-63109000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr12:63106200-63109600	Enhancers	Fetal Lung	lung
34	chr12:63106200-63110400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr12:63106400-63109400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr12:63106600-63110800	Weak transcription	Rectal Smooth Muscle	rectum
37	chr12:63107000-63109600	Enhancers	Fetal Muscle Trunk	muscle
38	chr12:63107200-63109600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr12:63107200-63112000	Enhancers	Brain Substantia Nigra	brain
40	chr12:63107200-63113000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr12:63107200-63125000	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr12:63107400-63110200	Weak transcription	Fetal Brain Female	brain
43	chr12:63107400-63112800	Weak transcription	Placenta	Placenta
44	chr12:63107600-63110200	Enhancers	Brain Inferior Temporal Lobe	brain
45	chr12:63107600-63112000	Enhancers	Fetal Kidney	kidney
46	chr12:63107800-63109200	Enhancers	Skeletal Muscle Male	skeletal muscle
47	chr12:63107800-63109800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
48	chr12:63108200-63108800	Enhancers	HUES64 Cell Line	embryonic stem cell
49	chr12:63108200-63108800	Enhancers	HSMM	muscle
50	chr12:63108200-63109400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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