Variant report

Variant	rs61926278
Chromosome Location	chr12:51112182-51112183
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10747583	0.86[AMR][1000 genomes]
rs10876045	0.84[AMR][1000 genomes]
rs10876055	0.86[AMR][1000 genomes]
rs10876059	0.86[AMR][1000 genomes]
rs10876066	0.86[AMR][1000 genomes]
rs10876069	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10876074	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10876087	0.81[ASN][1000 genomes]
rs11169453	0.81[AMR][1000 genomes]
rs11169484	0.86[AMR][1000 genomes]
rs11169486	0.86[AMR][1000 genomes]
rs11169490	0.85[AMR][1000 genomes]
rs11169492	0.86[AMR][1000 genomes]
rs11169506	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11169523	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11169524	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11503907	0.88[ASN][1000 genomes]
rs12307178	0.86[AMR][1000 genomes]
rs12372538	0.82[AMR][1000 genomes]
rs12372718	0.81[ASN][1000 genomes]
rs12425362	0.82[AMR][1000 genomes]
rs12427378	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12814717	0.86[AMR][1000 genomes]
rs12818741	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12825915	0.82[AMR][1000 genomes]
rs1316442	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1316607	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13378012	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1967576	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2090852	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2139930	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2264734	0.94[ASN][1000 genomes]
rs2280503	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2700478	0.87[ASN][1000 genomes]
rs34553264	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3742062	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3935870	0.86[AMR][1000 genomes]
rs4388959	0.98[ASN][1000 genomes]
rs61699126	0.84[AMR][1000 genomes]
rs6580761	0.80[ASN][1000 genomes]
rs7133160	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7133687	0.82[AMR][1000 genomes]
rs7137845	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7298661	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7298665	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7302435	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7487429	0.86[AMR][1000 genomes]
rs7965652	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs876080	0.89[ASN][1000 genomes]
rs9788075	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9943712	0.81[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs61926278	DIP2B	Cis_1M	lymphoblastoid	RTeQTL
rs61926278	ATF1	cis	Artery Tibial	GTEx

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:51063200-51138600	Strong transcription	Primary monocytes fromperipheralblood	blood
2	chr12:51063600-51138800	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr12:51063600-51145400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
4	chr12:51064000-51127400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr12:51067400-51120600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr12:51067400-51143600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr12:51067600-51142200	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr12:51068200-51141200	Strong transcription	Placenta	Placenta
9	chr12:51068200-51144000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr12:51074600-51139600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr12:51079200-51120600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr12:51080200-51145400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr12:51083400-51126000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr12:51085600-51118400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr12:51086200-51140800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr12:51086200-51142600	Strong transcription	Primary T helper cells PMA-I stimulated	--
17	chr12:51086400-51113400	Strong transcription	Cortex derived primary cultured neurospheres	brain
18	chr12:51090400-51145400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr12:51090600-51138400	Strong transcription	Primary neutrophils fromperipheralblood	blood
20	chr12:51093600-51128600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr12:51096000-51142000	Strong transcription	Fetal Muscle Leg	muscle
22	chr12:51096200-51144600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr12:51096800-51113400	Strong transcription	Duodenum Mucosa	Duodenum
24	chr12:51098800-51128200	Strong transcription	Brain Germinal Matrix	brain
25	chr12:51099600-51112200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr12:51099600-51117400	Weak transcription	Psoas Muscle	Psoas
27	chr12:51100000-51112200	Weak transcription	Fetal Brain Male	brain
28	chr12:51101000-51144800	Strong transcription	Fetal Stomach	stomach
29	chr12:51101200-51114000	Strong transcription	Fetal Intestine Small	intestine
30	chr12:51102000-51116800	Weak transcription	Small Intestine	intestine
31	chr12:51102600-51115000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr12:51102800-51112400	Weak transcription	Aorta	Aorta
33	chr12:51102800-51115200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr12:51103000-51112400	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr12:51103000-51112400	Weak transcription	K562	blood
36	chr12:51103000-51114400	Weak transcription	Colonic Mucosa	Colon
37	chr12:51103000-51118400	Weak transcription	NHDF-Ad	bronchial
38	chr12:51103200-51114800	Weak transcription	NHLF	lung
39	chr12:51103600-51115000	Weak transcription	Gastric	stomach
40	chr12:51103800-51112400	Weak transcription	Esophagus	oesophagus
41	chr12:51103800-51115000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr12:51104200-51112200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr12:51105200-51112200	Weak transcription	Fetal Heart	heart
44	chr12:51105400-51133600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr12:51106200-51112200	Weak transcription	HSMM	muscle
46	chr12:51107000-51113000	Strong transcription	Fetal Intestine Large	intestine
47	chr12:51107000-51113000	Strong transcription	Fetal Thymus	thymus
48	chr12:51107000-51113400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
49	chr12:51107000-51114000	Strong transcription	Brain Hippocampus Middle	brain
50	chr12:51107200-51112800	Strong transcription	Pancreas	Pancrea

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