Variant report

Variant	rs61929393
Chromosome Location	chr12:86330333-86330334
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10082857	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10779220	1.00[ASN][1000 genomes]
rs10779227	0.83[AFR][1000 genomes]
rs10863094	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10863111	1.00[ASN][1000 genomes]
rs10863112	1.00[ASN][1000 genomes]
rs10863113	1.00[ASN][1000 genomes]
rs10863114	1.00[ASN][1000 genomes]
rs10863124	1.00[ASN][1000 genomes]
rs11117089	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11117115	1.00[ASN][1000 genomes]
rs11117118	1.00[ASN][1000 genomes]
rs11117122	1.00[ASN][1000 genomes]
rs11117124	1.00[ASN][1000 genomes]
rs11117129	1.00[ASN][1000 genomes]
rs11608539	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11611607	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11615948	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12369468	0.83[ASN][1000 genomes]
rs12370270	0.83[ASN][1000 genomes]
rs17354637	1.00[ASN][1000 genomes]
rs1847206	0.83[AFR][1000 genomes]
rs2897186	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35629197	1.00[AFR][1000 genomes]
rs4143239	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4919774	1.00[ASN][1000 genomes]
rs61929394	1.00[ASN][1000 genomes]
rs61929395	1.00[ASN][1000 genomes]
rs61929399	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61929421	0.83[ASN][1000 genomes]
rs61929424	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61930913	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61931120	0.80[AFR][1000 genomes]
rs61931121	0.80[AFR][1000 genomes]
rs6539944	0.80[AFR][1000 genomes]
rs7132262	0.83[ASN][1000 genomes]
rs7135154	0.83[ASN][1000 genomes]
rs7303256	1.00[ASN][1000 genomes]
rs73176252	1.00[ASN][1000 genomes]
rs73177142	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73177167	0.92[ASN][1000 genomes]
rs73177169	0.92[ASN][1000 genomes]
rs73177179	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7961367	0.83[AFR][1000 genomes]
rs7966131	1.00[ASN][1000 genomes]
rs7971447	0.83[AFR][1000 genomes]
rs7972773	1.00[ASN][1000 genomes]
rs7973694	1.00[ASN][1000 genomes]
rs7975310	1.00[ASN][1000 genomes]
rs7976573	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9651977	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9738989	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049179	chr12:86056376-86799188	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv1797806	chr12:86198935-86425608	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv559667	chr12:86318004-86416212	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:86330200-86332000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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