Variant report

Variant	rs61929399
Chromosome Location	chr12:86338331-86338332
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10082857	0.83[ASN][1000 genomes]
rs10779220	0.83[ASN][1000 genomes]
rs10779227	0.92[AFR][1000 genomes]
rs10863094	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10863111	0.83[ASN][1000 genomes]
rs10863112	0.83[ASN][1000 genomes]
rs10863113	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10863114	0.83[ASN][1000 genomes]
rs10863121	0.83[ASN][1000 genomes]
rs10863124	0.83[ASN][1000 genomes]
rs10863129	0.83[EUR][1000 genomes]
rs11117089	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11117115	0.83[ASN][1000 genomes]
rs11117118	0.83[ASN][1000 genomes]
rs11117122	0.83[ASN][1000 genomes]
rs11117124	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11117129	0.83[ASN][1000 genomes]
rs11513955	0.84[AFR][1000 genomes]
rs11611607	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11615948	0.83[ASN][1000 genomes]
rs12369468	1.00[ASN][1000 genomes]
rs12370270	1.00[ASN][1000 genomes]
rs17354637	0.83[ASN][1000 genomes]
rs1847206	0.92[AFR][1000 genomes]
rs2897186	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35629197	0.91[AFR][1000 genomes]
rs4143239	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4919774	0.83[ASN][1000 genomes]
rs56224424	0.90[ASN][1000 genomes]
rs61929365	0.90[ASN][1000 genomes]
rs61929367	0.90[ASN][1000 genomes]
rs61929393	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61929394	0.83[ASN][1000 genomes]
rs61929395	0.83[ASN][1000 genomes]
rs61929421	1.00[ASN][1000 genomes]
rs61929424	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61930913	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61930914	0.90[ASN][1000 genomes]
rs61930921	0.90[ASN][1000 genomes]
rs61930925	0.90[ASN][1000 genomes]
rs61930957	0.90[ASN][1000 genomes]
rs61931120	0.88[AFR][1000 genomes]
rs61931121	0.88[AFR][1000 genomes]
rs6539944	0.88[AFR][1000 genomes]
rs7132262	1.00[ASN][1000 genomes]
rs7135154	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7303256	0.83[ASN][1000 genomes]
rs73176252	0.83[ASN][1000 genomes]
rs73177142	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73177158	0.90[ASN][1000 genomes]
rs73177179	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7398950	0.80[EUR][1000 genomes]
rs7961367	0.92[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs7966131	0.83[ASN][1000 genomes]
rs7971447	0.92[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs7972773	0.83[ASN][1000 genomes]
rs7973694	0.83[ASN][1000 genomes]
rs7975310	0.83[ASN][1000 genomes]
rs7976573	0.83[ASN][1000 genomes]
rs9651977	0.83[ASN][1000 genomes]
rs9738989	0.92[AFR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049179	chr12:86056376-86799188	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv1797806	chr12:86198935-86425608	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv559667	chr12:86318004-86416212	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:86337400-86338400	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr12:86337400-86339200	Enhancers	H1 Cell Line	embryonic stem cell
3	chr12:86338000-86338400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr12:86338200-86338400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
5	chr12:86338200-86338800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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