Variant report
Variant | rs61930067 |
---|---|
Chromosome Location | chr12:86210441-86210442 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10506918 | 1.00[ASN][1000 genomes] |
rs10506921 | 0.82[ASN][1000 genomes] |
rs10779216 | 1.00[ASN][1000 genomes] |
rs10863083 | 1.00[ASN][1000 genomes] |
rs10863085 | 0.89[ASN][1000 genomes] |
rs10863086 | 1.00[ASN][1000 genomes] |
rs11117042 | 1.00[ASN][1000 genomes] |
rs11117050 | 1.00[ASN][1000 genomes] |
rs11117051 | 1.00[ASN][1000 genomes] |
rs11117052 | 1.00[ASN][1000 genomes] |
rs11117053 | 1.00[ASN][1000 genomes] |
rs11117057 | 1.00[ASN][1000 genomes] |
rs11117064 | 0.93[ASN][1000 genomes] |
rs11117065 | 0.93[ASN][1000 genomes] |
rs11503595 | 1.00[ASN][1000 genomes] |
rs11608717 | 0.82[ASN][1000 genomes] |
rs11608719 | 0.82[ASN][1000 genomes] |
rs11610120 | 0.82[ASN][1000 genomes] |
rs11610627 | 0.82[ASN][1000 genomes] |
rs11610763 | 0.82[ASN][1000 genomes] |
rs11610789 | 0.82[ASN][1000 genomes] |
rs11611664 | 1.00[ASN][1000 genomes] |
rs11611968 | 0.82[ASN][1000 genomes] |
rs11612432 | 0.82[ASN][1000 genomes] |
rs11612928 | 0.82[ASN][1000 genomes] |
rs11612938 | 0.82[ASN][1000 genomes] |
rs11613070 | 0.82[ASN][1000 genomes] |
rs11613243 | 1.00[ASN][1000 genomes] |
rs11614033 | 1.00[ASN][1000 genomes] |
rs11614513 | 0.82[ASN][1000 genomes] |
rs11614830 | 1.00[ASN][1000 genomes] |
rs11614924 | 1.00[ASN][1000 genomes] |
rs11615953 | 0.89[ASN][1000 genomes] |
rs11830880 | 0.89[ASN][1000 genomes] |
rs11831336 | 0.90[ASN][1000 genomes] |
rs11831936 | 0.89[ASN][1000 genomes] |
rs11832503 | 1.00[ASN][1000 genomes] |
rs11832948 | 0.93[ASN][1000 genomes] |
rs11832992 | 1.00[ASN][1000 genomes] |
rs11833148 | 0.96[ASN][1000 genomes] |
rs11837152 | 1.00[ASN][1000 genomes] |
rs11838160 | 0.93[ASN][1000 genomes] |
rs12297441 | 1.00[ASN][1000 genomes] |
rs12300728 | 1.00[ASN][1000 genomes] |
rs12305828 | 1.00[ASN][1000 genomes] |
rs12307686 | 0.93[ASN][1000 genomes] |
rs12308839 | 1.00[ASN][1000 genomes] |
rs12308898 | 1.00[ASN][1000 genomes] |
rs12309296 | 1.00[ASN][1000 genomes] |
rs12309878 | 1.00[ASN][1000 genomes] |
rs12313658 | 0.89[ASN][1000 genomes] |
rs12313775 | 1.00[ASN][1000 genomes] |
rs12314274 | 1.00[ASN][1000 genomes] |
rs12314318 | 1.00[ASN][1000 genomes] |
rs12829972 | 0.82[ASN][1000 genomes] |
rs1349060 | 1.00[ASN][1000 genomes] |
rs1349061 | 1.00[ASN][1000 genomes] |
rs1349063 | 0.93[ASN][1000 genomes] |
rs1448096 | 1.00[ASN][1000 genomes] |
rs1448097 | 1.00[ASN][1000 genomes] |
rs1448098 | 1.00[ASN][1000 genomes] |
rs1448099 | 0.96[ASN][1000 genomes] |
rs1584368 | 1.00[ASN][1000 genomes] |
rs1584369 | 1.00[ASN][1000 genomes] |
rs17279205 | 0.82[ASN][1000 genomes] |
rs17279916 | 0.82[ASN][1000 genomes] |
rs17280216 | 0.96[ASN][1000 genomes] |
rs17280483 | 1.00[ASN][1000 genomes] |
rs17280643 | 1.00[ASN][1000 genomes] |
rs17280790 | 1.00[ASN][1000 genomes] |
rs17345028 | 0.82[ASN][1000 genomes] |
rs17345522 | 0.82[ASN][1000 genomes] |
rs17345787 | 0.96[ASN][1000 genomes] |
rs17345849 | 0.96[ASN][1000 genomes] |
rs17345975 | 1.00[ASN][1000 genomes] |
rs17346231 | 1.00[ASN][1000 genomes] |
rs1900700 | 1.00[ASN][1000 genomes] |
rs1900701 | 1.00[ASN][1000 genomes] |
rs2061686 | 0.82[ASN][1000 genomes] |
rs2197769 | 1.00[ASN][1000 genomes] |
rs2234762 | 0.93[ASN][1000 genomes] |
rs34555363 | 0.82[ASN][1000 genomes] |
rs35034633 | 0.82[ASN][1000 genomes] |
rs35648674 | 0.82[ASN][1000 genomes] |
rs36046732 | 0.82[ASN][1000 genomes] |
rs4274268 | 1.00[ASN][1000 genomes] |
rs4362214 | 1.00[ASN][1000 genomes] |
rs4436622 | 1.00[ASN][1000 genomes] |
rs4488288 | 1.00[ASN][1000 genomes] |
rs4540904 | 0.96[ASN][1000 genomes] |
rs4897829 | 0.82[ASN][1000 genomes] |
rs4897830 | 0.82[ASN][1000 genomes] |
rs4897831 | 0.82[ASN][1000 genomes] |
rs4897834 | 0.82[ASN][1000 genomes] |
rs4919770 | 1.00[ASN][1000 genomes] |
rs4919771 | 1.00[ASN][1000 genomes] |
rs4919779 | 1.00[ASN][1000 genomes] |
rs56082822 | 1.00[ASN][1000 genomes] |
rs56135828 | 0.82[ASN][1000 genomes] |
rs56330110 | 0.82[ASN][1000 genomes] |
rs57278040 | 1.00[ASN][1000 genomes] |
rs57614821 | 0.96[ASN][1000 genomes] |
rs58553548 | 0.89[ASN][1000 genomes] |
rs58742237 | 0.82[ASN][1000 genomes] |
rs59445394 | 1.00[ASN][1000 genomes] |
rs59668915 | 0.90[ASN][1000 genomes] |
rs59858864 | 0.82[ASN][1000 genomes] |
rs60539006 | 0.82[ASN][1000 genomes] |
rs60947649 | 0.82[ASN][1000 genomes] |
rs60986162 | 1.00[ASN][1000 genomes] |
rs61928899 | 0.82[ASN][1000 genomes] |
rs61928905 | 0.89[ASN][1000 genomes] |
rs61928906 | 0.89[ASN][1000 genomes] |
rs61928907 | 0.89[ASN][1000 genomes] |
rs61928909 | 0.87[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs61928910 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs61928911 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs61928912 | 0.90[ASN][1000 genomes] |
rs61928914 | 0.90[ASN][1000 genomes] |
rs61928916 | 0.90[ASN][1000 genomes] |
rs61928919 | 0.96[ASN][1000 genomes] |
rs61928920 | 0.85[ASN][1000 genomes] |
rs61928955 | 0.96[ASN][1000 genomes] |
rs61930029 | 0.82[ASN][1000 genomes] |
rs61930036 | 0.82[ASN][1000 genomes] |
rs61930064 | 1.00[ASN][1000 genomes] |
rs61930066 | 1.00[ASN][1000 genomes] |
rs61930068 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs61930074 | 1.00[ASN][1000 genomes] |
rs61930076 | 1.00[ASN][1000 genomes] |
rs61930078 | 1.00[ASN][1000 genomes] |
rs61930132 | 1.00[ASN][1000 genomes] |
rs61930137 | 1.00[ASN][1000 genomes] |
rs61930139 | 1.00[ASN][1000 genomes] |
rs61930140 | 1.00[ASN][1000 genomes] |
rs61930624 | 0.82[ASN][1000 genomes] |
rs61930625 | 0.82[ASN][1000 genomes] |
rs61930626 | 0.82[ASN][1000 genomes] |
rs61930629 | 0.82[ASN][1000 genomes] |
rs61930631 | 0.82[ASN][1000 genomes] |
rs61930632 | 0.82[ASN][1000 genomes] |
rs61930633 | 0.82[ASN][1000 genomes] |
rs61930637 | 0.82[ASN][1000 genomes] |
rs61930639 | 0.82[ASN][1000 genomes] |
rs61930640 | 0.82[ASN][1000 genomes] |
rs61930641 | 0.82[ASN][1000 genomes] |
rs61930644 | 0.82[ASN][1000 genomes] |
rs61930862 | 1.00[ASN][1000 genomes] |
rs61930864 | 1.00[ASN][1000 genomes] |
rs61930865 | 1.00[ASN][1000 genomes] |
rs61930873 | 1.00[ASN][1000 genomes] |
rs6539923 | 1.00[ASN][1000 genomes] |
rs6539924 | 1.00[ASN][1000 genomes] |
rs6539925 | 1.00[ASN][1000 genomes] |
rs6539926 | 1.00[ASN][1000 genomes] |
rs6539927 | 1.00[ASN][1000 genomes] |
rs6539928 | 0.96[ASN][1000 genomes] |
rs6539929 | 1.00[ASN][1000 genomes] |
rs6539931 | 1.00[ASN][1000 genomes] |
rs6539932 | 1.00[ASN][1000 genomes] |
rs6539933 | 1.00[ASN][1000 genomes] |
rs66656505 | 0.82[ASN][1000 genomes] |
rs67914794 | 0.82[ASN][1000 genomes] |
rs7133591 | 1.00[ASN][1000 genomes] |
rs7134732 | 1.00[ASN][1000 genomes] |
rs7137596 | 1.00[ASN][1000 genomes] |
rs7297996 | 0.96[ASN][1000 genomes] |
rs7298536 | 0.82[ASN][1000 genomes] |
rs7299285 | 1.00[ASN][1000 genomes] |
rs7302741 | 1.00[ASN][1000 genomes] |
rs7303330 | 1.00[ASN][1000 genomes] |
rs7304873 | 1.00[ASN][1000 genomes] |
rs7308229 | 1.00[ASN][1000 genomes] |
rs7309500 | 1.00[ASN][1000 genomes] |
rs7311532 | 1.00[ASN][1000 genomes] |
rs7316772 | 1.00[ASN][1000 genomes] |
rs73174576 | 0.82[ASN][1000 genomes] |
rs73176549 | 0.82[ASN][1000 genomes] |
rs73176583 | 1.00[ASN][1000 genomes] |
rs73184562 | 0.89[ASN][1000 genomes] |
rs7397266 | 0.90[ASN][1000 genomes] |
rs7399276 | 0.82[ASN][1000 genomes] |
rs7399277 | 0.82[ASN][1000 genomes] |
rs7953318 | 1.00[ASN][1000 genomes] |
rs7953353 | 1.00[ASN][1000 genomes] |
rs7957170 | 1.00[ASN][1000 genomes] |
rs7960130 | 1.00[ASN][1000 genomes] |
rs7965388 | 0.93[ASN][1000 genomes] |
rs7967183 | 1.00[ASN][1000 genomes] |
rs7968248 | 1.00[ASN][1000 genomes] |
rs7970081 | 1.00[ASN][1000 genomes] |
rs7970732 | 1.00[ASN][1000 genomes] |
rs7970842 | 1.00[ASN][1000 genomes] |
rs7974167 | 1.00[ASN][1000 genomes] |
rs7979156 | 0.82[ASN][1000 genomes] |
rs9788214 | 0.82[ASN][1000 genomes] |
rs9788252 | 0.82[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1054573 | chr12:85658602-86235433 | Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
2 | nsv1035600 | chr12:85661373-86235433 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
3 | nsv1052187 | chr12:85954455-86278200 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
4 | nsv541560 | chr12:85954455-86278200 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
5 | nsv1049179 | chr12:86056376-86799188 | Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
6 | nsv1049443 | chr12:86185887-86272493 | Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | n/a |
7 | esv1797806 | chr12:86198935-86425608 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
8 | nsv1036914 | chr12:86201703-86272493 | Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | n/a |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr12:86194200-86214000 | Weak transcription | HMEC | breast |
2 | chr12:86197600-86214600 | Weak transcription | HUVEC | blood vessel |
3 | chr12:86199800-86214000 | Weak transcription | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
4 | chr12:86199800-86215000 | Weak transcription | NH-A | brain |
5 | chr12:86199800-86228200 | Weak transcription | Left Ventricle | heart |
6 | chr12:86201800-86217000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
7 | chr12:86201800-86222600 | Weak transcription | Foreskin Keratinocyte Primary Cells skin02 | Skin |
8 | chr12:86202600-86217600 | Weak transcription | Foreskin Keratinocyte Primary Cells skin03 | Skin |
9 | chr12:86203800-86217400 | Weak transcription | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
10 | chr12:86208000-86216600 | Weak transcription | Pancreas | Pancrea |
11 | chr12:86208800-86213800 | Weak transcription | A549 | lung |
12 | chr12:86208800-86214000 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
13 | chr12:86208800-86219600 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
14 | chr12:86209400-86214000 | Weak transcription | Hela-S3 | cervix |