Variant report

Variant	rs61949533
Chromosome Location	chr12:86861901-86861902
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10506935	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12304593	0.82[AMR][1000 genomes]
rs12316480	0.82[AMR][1000 genomes]
rs17288772	0.85[AMR][1000 genomes]
rs17289052	0.90[AMR][1000 genomes]
rs17367374	0.90[AMR][1000 genomes]
rs17367869	0.97[AMR][1000 genomes]
rs17369073	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1922743	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2406157	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2406158	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55649116	0.82[AMR][1000 genomes]
rs55733909	0.82[AMR][1000 genomes]
rs55820226	0.82[AMR][1000 genomes]
rs55870715	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55904324	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60436792	0.95[AMR][1000 genomes]
rs61133374	0.95[AMR][1000 genomes]
rs61949475	0.95[AMR][1000 genomes]
rs61949482	0.97[AMR][1000 genomes]
rs61949483	0.92[AMR][1000 genomes]
rs61949532	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61949558	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61949559	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61950711	0.85[AMR][1000 genomes]
rs61950712	0.82[AMR][1000 genomes]
rs61950713	0.85[AMR][1000 genomes]
rs61950746	0.92[AMR][1000 genomes]
rs61950747	0.92[AMR][1000 genomes]
rs61950748	0.92[AMR][1000 genomes]
rs61950749	0.92[AMR][1000 genomes]
rs61950760	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61950761	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61950762	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61950763	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61950764	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61950771	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61950775	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61950780	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61950781	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73189394	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73189397	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73191472	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73191477	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73191482	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73191485	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73191486	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9705580	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754127	chr12:86723232-87576932	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv899395	chr12:86813367-87177972	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv916862	chr12:86837694-87718558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:86859000-86862400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr12:86861200-86867000	Weak transcription	Fetal Lung	lung

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