Variant report

Variant	rs61950714
Chromosome Location	chr12:86736449-86736450
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs11830448	0.81[ASN][1000 genomes]
rs12302310	0.91[ASN][1000 genomes]
rs12302551	0.91[ASN][1000 genomes]
rs12304593	0.94[EUR][1000 genomes]
rs12306280	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12316480	0.94[EUR][1000 genomes]
rs12319410	0.93[ASN][1000 genomes]
rs12319593	0.93[ASN][1000 genomes]
rs12581912	0.91[ASN][1000 genomes]
rs12582690	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17013858	0.81[ASN][1000 genomes]
rs17013981	0.83[ASN][1000 genomes]
rs17288772	0.98[EUR][1000 genomes]
rs17289052	0.98[EUR][1000 genomes]
rs17359446	0.94[EUR][1000 genomes]
rs17367374	0.98[EUR][1000 genomes]
rs17367869	0.98[EUR][1000 genomes]
rs1986602	0.91[ASN][1000 genomes]
rs1986603	0.89[ASN][1000 genomes]
rs2405929	0.91[ASN][1000 genomes]
rs2897274	0.91[ASN][1000 genomes]
rs55649116	0.94[EUR][1000 genomes]
rs55733909	0.94[EUR][1000 genomes]
rs55820226	0.98[EUR][1000 genomes]
rs55956857	0.88[EUR][1000 genomes]
rs56293486	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs57977247	0.81[ASN][1000 genomes]
rs59690693	0.82[ASN][1000 genomes]
rs60436792	0.94[EUR][1000 genomes]
rs60902071	0.93[ASN][1000 genomes]
rs61133374	0.98[EUR][1000 genomes]
rs61359740	0.93[ASN][1000 genomes]
rs61949047	0.85[EUR][1000 genomes]
rs61949048	0.88[EUR][1000 genomes]
rs61949049	0.88[EUR][1000 genomes]
rs61949475	0.98[EUR][1000 genomes]
rs61949482	0.96[EUR][1000 genomes]
rs61949483	0.90[EUR][1000 genomes]
rs61950663	0.88[EUR][1000 genomes]
rs61950665	0.88[EUR][1000 genomes]
rs61950667	0.88[EUR][1000 genomes]
rs61950671	0.88[EUR][1000 genomes]
rs61950674	0.88[EUR][1000 genomes]
rs61950706	0.93[EUR][1000 genomes]
rs61950711	0.98[EUR][1000 genomes]
rs61950712	0.98[EUR][1000 genomes]
rs61950713	0.97[EUR][1000 genomes]
rs61950746	0.98[EUR][1000 genomes]
rs61950747	0.98[EUR][1000 genomes]
rs61950748	0.98[EUR][1000 genomes]
rs61950749	0.98[EUR][1000 genomes]
rs7138352	0.90[ASN][1000 genomes]
rs7138786	0.84[ASN][1000 genomes]
rs73385292	0.93[ASN][1000 genomes]
rs73385293	0.93[ASN][1000 genomes]
rs767898	0.94[EUR][1000 genomes]
rs7953491	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049179	chr12:86056376-86799188	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2761759	chr12:86415936-86747726	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv518059	chr12:86416212-86747726	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1041397	chr12:86438607-86737558	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1037003	chr12:86610040-86798121	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1053234	chr12:86701070-86774957	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	esv2754127	chr12:86723232-87576932	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:86736400-86736600	Active TSS	Hela-S3	cervix

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