Variant report

Variant	rs61950749
Chromosome Location	chr12:86750356-86750357
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10506935	0.92[AMR][1000 genomes]
rs12304593	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12306280	0.92[EUR][1000 genomes]
rs12316480	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12582690	0.94[EUR][1000 genomes]
rs17288772	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17289052	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17359446	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17367374	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17367869	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17369073	0.92[AMR][1000 genomes]
rs1922743	0.92[AMR][1000 genomes]
rs2406157	0.92[AMR][1000 genomes]
rs2406158	0.92[AMR][1000 genomes]
rs55649116	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55733909	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55820226	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55870715	0.92[AMR][1000 genomes]
rs55904324	0.92[AMR][1000 genomes]
rs55956857	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56293486	0.96[EUR][1000 genomes]
rs60436792	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61133374	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61949045	0.82[AMR][1000 genomes]
rs61949047	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61949048	0.90[EUR][1000 genomes]
rs61949049	0.90[EUR][1000 genomes]
rs61949475	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61949482	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61949483	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61949532	0.92[AMR][1000 genomes]
rs61949533	0.92[AMR][1000 genomes]
rs61949558	0.92[AMR][1000 genomes]
rs61949559	0.90[AMR][1000 genomes]
rs61950663	0.90[EUR][1000 genomes]
rs61950665	0.90[EUR][1000 genomes]
rs61950667	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61950671	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61950674	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61950706	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61950711	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61950712	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61950713	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61950714	0.98[EUR][1000 genomes]
rs61950746	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61950747	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61950748	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61950760	0.90[AMR][1000 genomes]
rs61950761	0.92[AMR][1000 genomes]
rs61950762	0.92[AMR][1000 genomes]
rs61950763	0.92[AMR][1000 genomes]
rs61950764	0.92[AMR][1000 genomes]
rs61950771	0.92[AMR][1000 genomes]
rs61950775	0.92[AMR][1000 genomes]
rs61950780	0.92[AMR][1000 genomes]
rs61950781	0.87[AMR][1000 genomes]
rs73189394	0.90[AMR][1000 genomes]
rs73189397	0.92[AMR][1000 genomes]
rs73191472	0.92[AMR][1000 genomes]
rs73191477	0.92[AMR][1000 genomes]
rs73191482	0.92[AMR][1000 genomes]
rs73191485	0.92[AMR][1000 genomes]
rs73191486	0.92[AMR][1000 genomes]
rs767898	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9705580	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049179	chr12:86056376-86799188	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1037003	chr12:86610040-86798121	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1053234	chr12:86701070-86774957	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv2754127	chr12:86723232-87576932	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1041126	chr12:86736601-86774957	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
6	nsv1051494	chr12:86736601-86776021	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:86749800-86750600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
2	chr12:86750200-86750600	ZNF genes & repeats	Pancreas	Pancrea

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