Variant report

Variant	rs61950781
Chromosome Location	chr12:86889012-86889013
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10506935	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17289052	0.85[AMR][1000 genomes]
rs17367374	0.85[AMR][1000 genomes]
rs17367869	0.92[AMR][1000 genomes]
rs17369073	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1922743	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2406157	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2406158	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55870715	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55904324	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60436792	0.90[AMR][1000 genomes]
rs61133374	0.90[AMR][1000 genomes]
rs61949475	0.90[AMR][1000 genomes]
rs61949482	0.92[AMR][1000 genomes]
rs61949483	0.97[AMR][1000 genomes]
rs61949532	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61949533	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61949558	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61949559	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61950674	0.81[AMR][1000 genomes]
rs61950706	0.84[AMR][1000 genomes]
rs61950746	0.87[AMR][1000 genomes]
rs61950747	0.87[AMR][1000 genomes]
rs61950748	0.87[AMR][1000 genomes]
rs61950749	0.87[AMR][1000 genomes]
rs61950760	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61950761	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61950762	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61950763	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61950764	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61950771	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61950775	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61950780	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73189394	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73189397	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73191472	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73191477	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73191482	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73191485	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73191486	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9705580	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754127	chr12:86723232-87576932	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv899395	chr12:86813367-87177972	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv916862	chr12:86837694-87718558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv899396	chr12:86863041-87276957	ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv899397	chr12:86863041-87636831	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv899398	chr12:86880442-87051310	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv899399	chr12:86880442-87177972	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv275003	chr12:86880778-86890003	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:86888600-86890000	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr12:86888800-86889400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr12:86889000-86889400	Enhancers	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links