Variant report

Variant	rs61965909
Chromosome Location	chr13:95841270-95841271
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17189446	0.88[AMR][1000 genomes]
rs17268122	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17268163	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61965908	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61965911	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61965914	0.93[AMR][1000 genomes]
rs61965926	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533659	chr13:95757713-96042149	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv832689	chr13:95759073-95921308	Genic enhancers ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95752200-95844200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr13:95807000-95846000	Weak transcription	Brain Substantia Nigra	brain
3	chr13:95807000-95857800	Weak transcription	Esophagus	oesophagus
4	chr13:95807200-95844400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr13:95807200-95865600	Weak transcription	Colonic Mucosa	Colon
6	chr13:95808200-95841800	Weak transcription	Osteobl	bone
7	chr13:95808400-95854600	Weak transcription	NHEK	skin
8	chr13:95813200-95858000	Weak transcription	Aorta	Aorta
9	chr13:95815000-95844200	Weak transcription	Fetal Muscle Leg	muscle
10	chr13:95815200-95847800	Weak transcription	Hela-S3	cervix
11	chr13:95818200-95841800	Weak transcription	NHDF-Ad	bronchial
12	chr13:95823600-95844400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr13:95825400-95841400	Weak transcription	HUVEC	blood vessel
14	chr13:95827400-95872400	Weak transcription	NH-A	brain
15	chr13:95828600-95844200	Weak transcription	HSMM	muscle
16	chr13:95829400-95856000	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr13:95830200-95841600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr13:95830400-95841400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr13:95830400-95845400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr13:95830400-95845600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr13:95830400-95857800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr13:95830400-95857800	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr13:95831600-95844200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr13:95831600-95845200	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr13:95831600-95845600	Weak transcription	Fetal Intestine Large	intestine
26	chr13:95833000-95845600	Weak transcription	Brain Hippocampus Middle	brain
27	chr13:95833600-95856800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr13:95833800-95844000	Weak transcription	Stomach Smooth Muscle	stomach
29	chr13:95833800-95846000	Weak transcription	Duodenum Mucosa	Duodenum
30	chr13:95833800-95855400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr13:95833800-95856600	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr13:95833800-95859800	Weak transcription	Colon Smooth Muscle	Colon
33	chr13:95834000-95844200	Weak transcription	Ovary	ovary
34	chr13:95834000-95846000	Weak transcription	Gastric	stomach
35	chr13:95834000-95865400	Weak transcription	Psoas Muscle	Psoas
36	chr13:95834200-95845400	Weak transcription	HepG2	liver
37	chr13:95834400-95844200	Weak transcription	Lung	lung
38	chr13:95834400-95845800	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr13:95834400-95849200	Weak transcription	K562	blood
40	chr13:95835800-95841600	Weak transcription	Fetal Kidney	kidney
41	chr13:95836600-95841400	Weak transcription	Fetal Intestine Small	intestine
42	chr13:95837000-95841800	Weak transcription	GM12878-XiMat	blood
43	chr13:95837800-95841400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr13:95838200-95841600	Weak transcription	Stomach Mucosa	stomach
45	chr13:95838200-95867400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr13:95838800-95841400	Weak transcription	Monocytes-CD14+_RO01746	blood
47	chr13:95839200-95841400	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr13:95839200-95841600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr13:95839200-95841600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr13:95839200-95844400	Weak transcription	NHLF	lung

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