Variant report

Variant	rs61966715
Chromosome Location	chr13:96706924-96706925
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr13:96706900-96707080	A549	lung:	n/a	n/a
2	CEBPB	chr13:96706843-96707164	K562	blood:	n/a	n/a
3	POLR2A	chr13:96706773-96707101	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:96705694..96707387-chr13:96740919..96743720,3	MCF-7	breast:
2	chr13:96705761..96707656-chr13:96724280..96725801,2	MCF-7	breast:

Variant related genes	Relation type
UGGT2	TF binding region
ENSG00000185352	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs41306037	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs41315036	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs45454901	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61966717	0.85[EUR][1000 genomes]
rs61966754	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61966755	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61966758	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61966759	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61967960	0.84[EUR][1000 genomes]
rs61967961	0.80[EUR][1000 genomes]
rs61967964	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61967995	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61967998	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61968001	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61968003	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61968009	0.80[EUR][1000 genomes]
rs61968010	0.80[EUR][1000 genomes]
rs61968012	0.80[EUR][1000 genomes]
rs61968031	0.80[EUR][1000 genomes]
rs61968032	0.80[EUR][1000 genomes]
rs61972863	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61972866	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61972867	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61972891	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61972897	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61972899	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61972901	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61972902	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61972903	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61972905	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61972921	0.87[EUR][1000 genomes]
rs61972926	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61972928	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61972930	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61972931	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61972933	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61972943	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61972945	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61972946	0.85[EUR][1000 genomes]
rs61972947	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61972950	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61972951	0.85[EUR][1000 genomes]
rs61972952	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61972953	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61972954	1.00[EUR][1000 genomes]
rs61973960	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61973962	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61973964	0.94[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs61973968	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61973969	0.94[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs61973970	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050430	chr13:96508530-97020734	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv541883	chr13:96508530-97020734	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1041165	chr13:96522021-96966520	Enhancers Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1051574	chr13:96550653-96779248	Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1040320	chr13:96573646-96790859	Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv869471	chr13:96622327-97223956	Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
7	nsv530390	chr13:96681439-97193029	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
8	nsv900936	chr13:96697209-97032483	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	esv3390792	chr13:96705451-96707499	Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96704200-96707000	Active TSS	iPS-15b Cell Line	embryonic stem cell
2	chr13:96704400-96707200	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr13:96706000-96708200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr13:96706600-96707000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr13:96706600-96707000	Enhancers	Placenta	Placenta
6	chr13:96706800-96707000	Enhancers	H1 Cell Line	embryonic stem cell
7	chr13:96706800-96707000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr13:96706800-96707200	Active TSS	ES-WA7 Cell Line	embryonic stem cell

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