Variant report

Variant	rs61972867
Chromosome Location	chr13:96501300-96501301
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs17885267	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs41306037	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41315036	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45454901	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61966715	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61972863	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61972866	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61972891	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61972897	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61972899	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61972901	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61972902	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61972903	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61972905	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61972921	0.96[EUR][1000 genomes]
rs61972926	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61972928	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61972930	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61972931	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61972933	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61972943	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61972945	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61972947	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61972950	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61972952	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61972953	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61972954	0.92[EUR][1000 genomes]
rs61973960	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61973962	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61973968	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61973970	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61975170	1.00[AMR][1000 genomes]
rs61975179	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832690	chr13:96330757-96508077	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	esv3509289	chr13:96461000-96505090	ZNF genes & repeats Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3509290	chr13:96461000-96505090	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv832691	chr13:96478098-96659823	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv900935	chr13:96497070-96631221	Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96476000-96502600	Weak transcription	Fetal Heart	heart
2	chr13:96478000-96502600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr13:96478000-96502600	Weak transcription	Left Ventricle	heart
4	chr13:96478000-96568400	Weak transcription	Placenta	Placenta
5	chr13:96478200-96502200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr13:96478200-96502600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr13:96478200-96502600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr13:96478200-96502600	Weak transcription	Aorta	Aorta
9	chr13:96478200-96502600	Weak transcription	Fetal Stomach	stomach
10	chr13:96478200-96502600	Weak transcription	Gastric	stomach
11	chr13:96478200-96502600	Weak transcription	Ovary	ovary
12	chr13:96486400-96502400	Weak transcription	Osteobl	bone
13	chr13:96486400-96502600	Weak transcription	Hela-S3	cervix
14	chr13:96486400-96502600	Weak transcription	NHLF	lung
15	chr13:96486400-96503000	Weak transcription	NHDF-Ad	bronchial
16	chr13:96486600-96502200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr13:96486600-96502200	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr13:96486600-96502400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr13:96486600-96502400	Weak transcription	HMEC	breast
20	chr13:96486600-96502600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr13:96486600-96502600	Weak transcription	NH-A	brain
22	chr13:96487000-96510000	Weak transcription	HUVEC	blood vessel
23	chr13:96490400-96502200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr13:96491000-96502200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr13:96493600-96502200	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr13:96493800-96502200	Weak transcription	Fetal Muscle Leg	muscle
27	chr13:96493800-96502400	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr13:96493800-96502600	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr13:96493800-96502600	Weak transcription	Pancreas	Pancrea
30	chr13:96495000-96502200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr13:96495000-96590800	Weak transcription	Rectal Smooth Muscle	rectum
32	chr13:96495800-96502200	Weak transcription	Duodenum Mucosa	Duodenum
33	chr13:96495800-96502400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr13:96495800-96502600	Weak transcription	Adipose Nuclei	Adipose
35	chr13:96496200-96502600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr13:96496800-96502600	Weak transcription	Brain Substantia Nigra	brain
37	chr13:96498200-96502400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr13:96498400-96502600	Weak transcription	Psoas Muscle	Psoas
39	chr13:96498400-96549800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr13:96498600-96502200	Weak transcription	Liver	Liver
41	chr13:96498600-96502400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr13:96498600-96502400	Weak transcription	Fetal Muscle Trunk	muscle
43	chr13:96498800-96503800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
44	chr13:96499200-96501800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr13:96499200-96502800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr13:96499400-96515400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
47	chr13:96499800-96502200	Weak transcription	Brain Hippocampus Middle	brain
48	chr13:96500000-96502200	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr13:96500200-96501600	Strong transcription	HSMM	muscle
50	chr13:96500400-96502200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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