Variant report

Variant	rs61972891
Chromosome Location	chr13:96506464-96506465
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs17885267	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs41306037	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41315036	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45454901	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61966715	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61972863	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61972866	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61972867	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61972897	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61972899	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61972901	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61972902	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61972903	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61972905	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61972921	0.96[EUR][1000 genomes]
rs61972926	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61972928	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61972930	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61972931	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61972933	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61972943	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61972945	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61972947	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61972950	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61972952	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61972953	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61972954	0.92[EUR][1000 genomes]
rs61973960	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61973962	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61973968	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61973970	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61975170	1.00[AMR][1000 genomes]
rs61975179	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832690	chr13:96330757-96508077	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv832691	chr13:96478098-96659823	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv900935	chr13:96497070-96631221	Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96478000-96568400	Weak transcription	Placenta	Placenta
2	chr13:96487000-96510000	Weak transcription	HUVEC	blood vessel
3	chr13:96495000-96590800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr13:96498400-96549800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr13:96499400-96515400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr13:96502000-96522400	Weak transcription	Colon Smooth Muscle	Colon
7	chr13:96502400-96535400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr13:96502600-96552600	Weak transcription	Brain Germinal Matrix	brain
9	chr13:96502800-96506600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr13:96502800-96506800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr13:96502800-96514800	Weak transcription	Gastric	stomach
12	chr13:96502800-96562600	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr13:96503000-96506600	Strong transcription	HSMM	muscle
14	chr13:96503000-96506800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr13:96503000-96506800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr13:96503000-96508600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr13:96503000-96510600	Weak transcription	NHLF	lung
18	chr13:96503000-96517400	Weak transcription	K562	blood
19	chr13:96503000-96522600	Weak transcription	Aorta	Aorta
20	chr13:96503000-96522600	Weak transcription	Pancreas	Pancrea
21	chr13:96503000-96523600	Weak transcription	Esophagus	oesophagus
22	chr13:96503000-96526800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr13:96503000-96527200	Weak transcription	Fetal Kidney	kidney
24	chr13:96503000-96567400	Weak transcription	NHEK	skin
25	chr13:96503200-96506800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr13:96503200-96508200	Weak transcription	Brain Anterior Caudate	brain
27	chr13:96503200-96510200	Weak transcription	Hela-S3	cervix
28	chr13:96503200-96510400	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr13:96503200-96522600	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr13:96503200-96522800	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr13:96503200-96527800	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr13:96503200-96535200	Weak transcription	HepG2	liver
33	chr13:96503200-96542000	Weak transcription	Brain Substantia Nigra	brain
34	chr13:96503200-96542000	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr13:96503200-96542200	Weak transcription	Brain Hippocampus Middle	brain
36	chr13:96503200-96558000	Weak transcription	NHDF-Ad	bronchial
37	chr13:96503200-96558200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr13:96503200-96558800	Weak transcription	Primary hematopoietic stem cells	blood
39	chr13:96503400-96520400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr13:96503400-96521800	Weak transcription	HSMMtube	muscle
41	chr13:96503400-96522600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr13:96503400-96528600	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr13:96503400-96542000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr13:96503400-96555400	Weak transcription	Fetal Heart	heart
45	chr13:96503400-96580800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr13:96503600-96506600	Strong transcription	Liver	Liver
47	chr13:96503600-96510400	Weak transcription	Psoas Muscle	Psoas
48	chr13:96503600-96510400	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr13:96503600-96510600	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr13:96503600-96510600	Weak transcription	Stomach Mucosa	stomach

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