Variant report

Variant	rs61975179
Chromosome Location	chr13:96323290-96323291
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17885267	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs41306037	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs41315036	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs45454901	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61972863	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61972866	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61972867	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61972891	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61972897	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61972899	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61972901	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61972902	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61972903	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61972905	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61972921	0.83[EUR][1000 genomes]
rs61975170	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900934	chr13:96255706-96327574	Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96317400-96327000	ZNF genes & repeats	Liver	Liver
2	chr13:96322800-96323400	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr13:96322800-96326200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr13:96323000-96323400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
5	chr13:96323000-96324400	ZNF genes & repeats	Aorta	Aorta
6	chr13:96323000-96324600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
7	chr13:96323000-96328400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr13:96323200-96323800	ZNF genes & repeats	NHEK	skin
9	chr13:96323200-96324200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr13:96323200-96324400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr13:96323200-96328200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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