Variant report

Variant	rs61975190
Chromosome Location	chr13:96391409-96391410
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10467347	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17878797	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17879366	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17880519	0.83[AFR][1000 genomes]
rs28503176	0.80[ASN][1000 genomes]
rs4550324	0.80[ASN][1000 genomes]
rs56804437	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61975193	0.94[AFR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7318647	0.93[ASN][1000 genomes]
rs7324577	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73554913	0.96[ASN][1000 genomes]
rs7983920	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7993991	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7994177	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9584318	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9584321	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9590319	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9590320	0.96[ASN][1000 genomes]
rs9590322	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9590323	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9590329	0.80[ASN][1000 genomes]
rs9590335	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832690	chr13:96330757-96508077	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96356600-96393600	Weak transcription	Right Ventricle	heart
2	chr13:96361000-96393600	Weak transcription	Spleen	Spleen
3	chr13:96362800-96393800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr13:96366400-96415800	Weak transcription	HSMMtube	muscle
5	chr13:96367600-96436000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr13:96367800-96430200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr13:96369200-96393600	Weak transcription	Pancreas	Pancrea
8	chr13:96369200-96393800	Weak transcription	Esophagus	oesophagus
9	chr13:96369400-96393600	Weak transcription	Gastric	stomach
10	chr13:96376000-96393600	Weak transcription	Left Ventricle	heart
11	chr13:96376200-96393600	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr13:96378000-96393400	Weak transcription	HSMM	muscle
13	chr13:96384400-96393800	Weak transcription	Fetal Stomach	stomach
14	chr13:96386600-96393800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr13:96386800-96393200	Weak transcription	A549	lung
16	chr13:96386800-96393400	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr13:96386800-96397600	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr13:96386800-96415200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr13:96386800-96415600	Weak transcription	Primary hematopoietic stem cells	blood
20	chr13:96387000-96393000	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr13:96387000-96393200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr13:96387000-96393400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr13:96387000-96393400	Weak transcription	Osteobl	bone
24	chr13:96387000-96393600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr13:96387000-96393600	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr13:96387000-96394000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr13:96387000-96397000	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr13:96387000-96397600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr13:96387000-96397600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr13:96387000-96399600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr13:96387000-96403400	Weak transcription	Primary B cells from cord blood	blood
32	chr13:96387000-96409600	Weak transcription	Liver	Liver
33	chr13:96387000-96412000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr13:96387000-96412800	Weak transcription	Dnd41	blood
35	chr13:96387000-96415400	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr13:96387000-96428800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr13:96387200-96397200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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