Variant report

Variant	rs61977438
Chromosome Location	chr14:70587624-70587625
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:70587558..70588170-chr5:3065184..3066056,2	MCF-7	breast:

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10444731	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10444732	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10444733	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10483824	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11158837	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11158839	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158840	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1122707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1122708	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11850592	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12147147	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12147341	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12147621	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12147634	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17107798	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17107893	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17107920	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17107925	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17175527	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17175597	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17175695	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17175848	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17175939	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17175960	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17765251	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17765304	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17765370	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17765449	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17765575	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17765586	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2605	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4902779	0.94[EUR][1000 genomes]
rs56251207	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56266899	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56374433	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56935411	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60552299	0.91[EUR][1000 genomes]
rs61977430	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61977439	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61977440	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61977443	0.98[EUR][1000 genomes]
rs61977444	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61977445	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61977446	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61977448	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61977449	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61977450	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61977451	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61977453	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61977454	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61977455	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61977456	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61977457	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61978160	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61978162	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61978164	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61978165	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61978175	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61978178	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61978184	0.92[EUR][1000 genomes]
rs61978185	0.92[EUR][1000 genomes]
rs61978186	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61978187	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61978188	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61978189	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7140688	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7143465	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7144377	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7148926	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7149304	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7158149	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7158867	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7159555	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs8011864	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8015011	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8015205	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8018678	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs998306	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832826	chr14:70559589-70723464	Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70579800-70599400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr14:70583400-70587800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr14:70583400-70588600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr14:70583600-70599600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr14:70584000-70588000	Weak transcription	Fetal Brain Female	brain
6	chr14:70584000-70588200	Weak transcription	Fetal Brain Male	brain
7	chr14:70585600-70589200	Enhancers	Psoas Muscle	Psoas
8	chr14:70586600-70589400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr14:70586800-70588000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr14:70586800-70588000	Weak transcription	Brain Angular Gyrus	brain
11	chr14:70586800-70589000	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr14:70586800-70589200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr14:70587200-70588000	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr14:70587200-70588200	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr14:70587200-70589000	Enhancers	H1 Cell Line	embryonic stem cell
16	chr14:70587200-70589200	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr14:70587200-70589200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr14:70587200-70589400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr14:70587400-70588000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell

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