Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs17649639	1.00[ASN][1000 genomes]
rs17651066	1.00[ASW][hapmap];0.89[MKK][hapmap]
rs2926178	1.00[CEU][hapmap];1.00[GIH][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap]
rs301743	0.86[ASN][1000 genomes]
rs301746	1.00[AFR][1000 genomes]
rs301748	0.85[CEU][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs301749	0.89[MKK][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs301751	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs301753	0.86[ASN][1000 genomes]
rs3106400	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs368107	0.86[ASN][1000 genomes]
rs386851	0.89[MKK][hapmap]
rs400358	0.85[CEU][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs414373	0.85[CEU][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs419767	1.00[AFR][1000 genomes]
rs440416	1.00[AFR][1000 genomes]
rs446247	0.86[ASN][1000 genomes]
rs448588	1.00[CHD][hapmap];0.86[ASN][1000 genomes]
rs449118	0.85[CEU][hapmap]
rs452747	0.85[CEU][hapmap];0.86[ASN][1000 genomes]
rs453273	0.86[ASN][1000 genomes]
rs471271	0.85[CEU][hapmap]
rs551895	0.86[ASN][1000 genomes]
rs594799	0.86[ASN][1000 genomes]
rs619629	1.00[AFR][1000 genomes]
rs656949	0.85[CEU][hapmap]
rs658740	0.85[CEU][hapmap]
rs669825	1.00[AFR][1000 genomes]
rs682319	0.89[MKK][hapmap]
rs687476	0.83[MKK][hapmap];0.86[ASN][1000 genomes]
rs7413858	1.00[CEU][hapmap];1.00[GIH][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006504	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv535288	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1006028	chr1:216268796-216432545	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv549199	chr1:216384908-216814702	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216408000-216408600	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr1:216408000-216408800	Enhancers	HUES6 Cell Line	embryonic stem cell

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