Variant report

Variant	rs61980615
Chromosome Location	chr14:70366377-70366378
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11627910	0.88[ASN][1000 genomes]
rs11627960	0.88[ASN][1000 genomes]
rs17558231	0.94[AMR][1000 genomes]
rs17558357	0.94[AMR][1000 genomes]
rs1958080	1.00[ASN][1000 genomes]
rs1958082	1.00[ASN][1000 genomes]
rs1958083	1.00[ASN][1000 genomes]
rs1958084	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35494931	0.88[ASN][1000 genomes]
rs4528503	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57951641	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59997769	1.00[ASN][1000 genomes]
rs61980565	1.00[AMR][1000 genomes]
rs61980566	1.00[AMR][1000 genomes]
rs61980568	0.94[ASN][1000 genomes]
rs61980569	0.89[ASN][1000 genomes]
rs61980570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61980571	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61980573	1.00[ASN][1000 genomes]
rs61980574	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61980575	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61980576	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61980616	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61980617	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61980618	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61980619	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61980621	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61980622	0.94[ASN][1000 genomes]
rs61980623	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs61980627	0.94[ASN][1000 genomes]
rs61980628	0.88[ASN][1000 genomes]
rs61980629	0.88[ASN][1000 genomes]
rs61980630	0.88[ASN][1000 genomes]
rs61983523	0.94[AMR][1000 genomes]
rs61983525	0.94[AMR][1000 genomes]
rs6573916	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs749396	0.94[AMR][1000 genomes]
rs8003374	1.00[AMR][1000 genomes]
rs8020942	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
3	nsv832824	chr14:70320639-70511401	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70358400-70369400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:70364000-70370600	Weak transcription	HepG2	liver
3	chr14:70364000-70387600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr14:70364200-70367800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr14:70364600-70367400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr14:70365400-70367000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr14:70365400-70367600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr14:70365600-70367600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr14:70365600-70368800	Genic enhancers	Hela-S3	cervix
10	chr14:70365800-70367200	Genic enhancers	Cortex derived primary cultured neurospheres	brain
11	chr14:70366000-70366800	Weak transcription	Liver	Liver
12	chr14:70366000-70367400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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