Variant report

Variant	rs61980656
Chromosome Location	chr14:70410226-70410227
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:70382423..70384132-chr14:70408003..70410607,2	MCF-7	breast:
2	chr14:70403462..70405160-chr14:70409353..70411324,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10142893	1.00[ASN][1000 genomes]
rs12184944	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12185053	1.00[ASN][1000 genomes]
rs28609860	1.00[ASN][1000 genomes]
rs59949074	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61977383	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61977384	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61977387	0.83[EUR][1000 genomes]
rs61977388	0.83[EUR][1000 genomes]
rs61977389	0.81[EUR][1000 genomes]
rs61980655	0.98[EUR][1000 genomes]
rs61980657	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61980658	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61981598	1.00[ASN][1000 genomes]
rs61981599	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61981600	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61981601	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61981602	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61981760	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61981761	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61981762	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61981763	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61981764	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61981765	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61981766	1.00[ASN][1000 genomes]
rs61981767	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
3	nsv832824	chr14:70320639-70511401	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70403600-70411600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:70405200-70410800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr14:70407000-70410400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr14:70407800-70411200	Enhancers	Pancreas	Pancrea
5	chr14:70408400-70410800	Enhancers	Fetal Intestine Large	intestine
6	chr14:70408800-70410400	Flanking Active TSS	HepG2	liver
7	chr14:70408800-70410800	Enhancers	Fetal Intestine Small	intestine
8	chr14:70409000-70410400	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr14:70409000-70410600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr14:70409000-70410600	Strong transcription	Hela-S3	cervix
11	chr14:70409400-70410400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr14:70409400-70410800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr14:70409400-70411000	Enhancers	Gastric	stomach
14	chr14:70409600-70410600	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr14:70409800-70410400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr14:70409800-70410400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
17	chr14:70409800-70413200	Enhancers	Liver	Liver
18	chr14:70410000-70410400	Enhancers	Fetal Stomach	stomach
19	chr14:70410000-70410800	Enhancers	Fetal Muscle Leg	muscle
20	chr14:70410000-70415800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr14:70410200-70410600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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