Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:70054564..70056405-chr14:70060723..70063305,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1957369	0.88[AMR][1000 genomes]
rs2332094	0.80[EUR][1000 genomes]
rs4899303	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4899304	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4902728	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55727771	0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs55817110	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55923041	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56249045	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56791796	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57769796	0.83[ASN][1000 genomes]
rs61980683	0.82[ASN][1000 genomes]
rs61980684	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61980693	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61982438	0.86[AMR][1000 genomes]
rs61982440	0.86[AMR][1000 genomes]
rs6573892	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7141009	0.83[ASN][1000 genomes]
rs7151003	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8006991	0.80[EUR][1000 genomes]
rs873176	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049280	chr14:70036804-70172630	Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv542124	chr14:70036804-70172630	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70043800-70067200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:70060400-70076600	Weak transcription	Brain Angular Gyrus	brain
3	chr14:70060800-70076800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr14:70061400-70063200	Enhancers	Esophagus	oesophagus
5	chr14:70062200-70067000	Weak transcription	Fetal Stomach	stomach

Quick Search: