Variant report

Variant	rs61982105
Chromosome Location	chr14:70247168-70247169
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:70196914..70198429-chr14:70246802..70249135,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10130174	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10145643	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11623504	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11626135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11626930	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11628140	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11628646	0.97[EUR][1000 genomes]
rs11628755	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11629222	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12431918	0.92[EUR][1000 genomes]
rs12434311	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12434937	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17107282	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28488181	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28595072	0.97[EUR][1000 genomes]
rs2877596	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4340264	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4341691	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs45527638	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56063215	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56154784	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61982072	1.00[AFR][1000 genomes]
rs61982074	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61982101	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61982104	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61982106	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61982107	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7159823	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72725721	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725750	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8013586	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8014462	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8018389	0.97[EUR][1000 genomes]
rs8019166	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8020042	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs943276	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs943277	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70235400-70248200	Strong transcription	Fetal Muscle Trunk	muscle
2	chr14:70235800-70248800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
3	chr14:70235800-70249200	Strong transcription	HSMM	muscle
4	chr14:70236000-70247600	Strong transcription	HUES64 Cell Line	embryonic stem cell
5	chr14:70236000-70248800	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr14:70236400-70248800	Strong transcription	Primary B cells from cord blood	blood
7	chr14:70236600-70247200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
8	chr14:70236600-70248200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr14:70236600-70248200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr14:70236600-70248200	Strong transcription	HMEC	breast
11	chr14:70236600-70248400	Strong transcription	Fetal Lung	lung
12	chr14:70236600-70249400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr14:70236800-70247200	Strong transcription	NH-A	brain
14	chr14:70236800-70247800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr14:70236800-70248000	Weak transcription	Right Atrium	heart
16	chr14:70236800-70248200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
17	chr14:70236800-70248400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr14:70236800-70248600	Strong transcription	Fetal Brain Female	brain
19	chr14:70236800-70248800	Strong transcription	Rectal Mucosa Donor 29	rectum
20	chr14:70236800-70249000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr14:70236800-70249000	Strong transcription	Rectal Mucosa Donor 31	rectum
22	chr14:70237000-70253200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr14:70237200-70247400	Strong transcription	Muscle Satellite Cultured Cells	--
24	chr14:70237200-70248400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr14:70237400-70248800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr14:70237600-70247200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr14:70237600-70248200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr14:70237600-70248800	Strong transcription	Primary B cells from peripheral blood	blood
29	chr14:70237600-70248800	Strong transcription	Brain Substantia Nigra	brain
30	chr14:70237600-70248800	Strong transcription	NHLF	lung
31	chr14:70237600-70249000	Strong transcription	A549	lung
32	chr14:70237600-70253400	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr14:70237800-70248400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr14:70237800-70248800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr14:70237800-70249000	Strong transcription	Duodenum Mucosa	Duodenum
36	chr14:70238200-70248600	Strong transcription	Fetal Intestine Large	intestine
37	chr14:70238200-70249000	Strong transcription	Stomach Smooth Muscle	stomach
38	chr14:70238200-70263600	Weak transcription	Stomach Mucosa	stomach
39	chr14:70238400-70254600	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr14:70239600-70249000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
41	chr14:70239800-70247400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr14:70240400-70248400	Strong transcription	Thymus	Thymus
43	chr14:70241000-70256200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr14:70241200-70251600	Weak transcription	Colonic Mucosa	Colon
45	chr14:70242800-70247800	Strong transcription	Rectal Smooth Muscle	rectum
46	chr14:70243200-70249200	Strong transcription	Fetal Thymus	thymus
47	chr14:70243600-70249200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr14:70244000-70248400	Strong transcription	Brain Hippocampus Middle	brain
49	chr14:70244000-70249000	Strong transcription	Brain Inferior Temporal Lobe	brain
50	chr14:70244200-70248800	Strong transcription	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links