Variant report

Variant	rs61982148
Chromosome Location	chr14:70286768-70286769
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11844140	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2094273	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2094274	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4293310	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4508369	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55702672	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55813576	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56011122	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56019785	0.84[AMR][1000 genomes]
rs61982146	0.82[AMR][1000 genomes]
rs61982149	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61982152	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61982154	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61982155	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61982156	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61983461	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61983462	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61983464	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61983474	0.84[AMR][1000 genomes]
rs61983475	0.82[AMR][1000 genomes]
rs61983476	0.87[AMR][1000 genomes]
rs61983519	0.84[AMR][1000 genomes]
rs61983520	0.84[AMR][1000 genomes]
rs7157732	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72725783	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72725796	0.84[AMR][1000 genomes]
rs72725797	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70282400-70287800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr14:70284200-70288200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:70285000-70286800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:70285200-70287000	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr14:70285400-70286800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr14:70286000-70286800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr14:70286000-70286800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr14:70286200-70286800	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr14:70286200-70286800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr14:70286600-70286800	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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