Variant report

Variant	rs61982982
Chromosome Location	chr14:32946767-32946768
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32941433..32942936-chr14:32946433..32948525,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs17412060	1.00[ASN][1000 genomes]
rs17412116	1.00[ASN][1000 genomes]
rs1951193	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1951195	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1951196	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1957027	0.98[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1957028	0.98[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1957029	0.98[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1957030	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58490247	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58923983	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60217119	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60993482	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61982968	0.93[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61982981	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61982983	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61982984	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6571526	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7148326	0.86[ASN][1000 genomes]
rs7149658	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8014037	0.88[AFR][1000 genomes]
rs8014051	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8017798	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8018953	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758352	chr14:32858480-33016442	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759978	chr14:32858480-33016442	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv901595	chr14:32928634-32961434	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32938000-32947800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:32942000-32947200	Weak transcription	Right Atrium	heart
3	chr14:32943000-32947000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr14:32943000-32947000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr14:32943200-32947200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr14:32943200-32947200	Weak transcription	Osteobl	bone
7	chr14:32943200-32947400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr14:32943200-32950800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr14:32943600-32947000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr14:32943600-32947000	Weak transcription	NHLF	lung
11	chr14:32943600-32947200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr14:32943600-32947200	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr14:32944200-32948000	Enhancers	Brain Hippocampus Middle	brain
14	chr14:32944600-32947000	Weak transcription	HSMM	muscle
15	chr14:32944600-32947000	Weak transcription	HSMMtube	muscle
16	chr14:32944800-32946800	Weak transcription	HMEC	breast
17	chr14:32944800-32947200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr14:32945400-32947800	Enhancers	Brain Cingulate Gyrus	brain
19	chr14:32945400-32948200	Enhancers	Brain Substantia Nigra	brain
20	chr14:32945600-32946800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr14:32945600-32947800	Enhancers	Rectal Smooth Muscle	rectum
22	chr14:32945600-32948000	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr14:32945600-32948000	Enhancers	Colon Smooth Muscle	Colon
24	chr14:32945600-32948200	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr14:32945800-32947600	Enhancers	Fetal Heart	heart
26	chr14:32945800-32947600	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr14:32945800-32947600	Enhancers	Stomach Smooth Muscle	stomach
28	chr14:32945800-32947800	Enhancers	Brain Anterior Caudate	brain
29	chr14:32945800-32948200	Enhancers	Brain Angular Gyrus	brain
30	chr14:32945800-32950200	Enhancers	NHDF-Ad	bronchial
31	chr14:32946000-32946800	Enhancers	Right Ventricle	heart
32	chr14:32946000-32947600	Enhancers	Left Ventricle	heart
33	chr14:32946200-32948200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr14:32946400-32947800	Enhancers	Fetal Brain Male	brain
35	chr14:32946400-32948000	Enhancers	Aorta	Aorta
36	chr14:32946400-32948200	Enhancers	NHEK	skin
37	chr14:32946600-32946800	Enhancers	Fetal Muscle Leg	muscle
38	chr14:32946600-32947000	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr14:32946600-32947600	Enhancers	Esophagus	oesophagus
40	chr14:32946600-32947800	Enhancers	Fetal Brain Female	brain
41	chr14:32946600-32948400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr14:32946600-32948400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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