Variant report

Variant	rs61983464
Chromosome Location	chr14:70301474-70301475
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:70299842..70301528-chr14:70310568..70312131,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10498531	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11844140	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2094273	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2094274	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2182521	0.82[EUR][1000 genomes]
rs4293310	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4508369	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55702672	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55813576	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56011122	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56019785	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61982146	0.84[EUR][1000 genomes]
rs61982148	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61982149	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61982152	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61982154	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61982155	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61982156	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61983461	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61983462	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61983474	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61983475	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61983476	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61983519	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61983520	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7157732	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72725783	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72725796	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72725797	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70295800-70306400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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