Variant report

Variant	rs61983474
Chromosome Location	chr14:70310364-70310365
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10498531	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11844140	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2094273	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2094274	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2182521	0.97[EUR][1000 genomes]
rs4293310	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4508369	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs55702672	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs55813576	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56011122	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56019785	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58971840	0.90[AFR][1000 genomes]
rs59829736	0.90[AFR][1000 genomes]
rs61982148	0.84[AMR][1000 genomes]
rs61982149	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61982152	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61982154	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61982155	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61982156	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61983461	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61983462	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61983464	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61983475	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61983476	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61983519	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61983520	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7157732	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72725783	0.87[AMR][1000 genomes]
rs72725796	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72725797	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70306400-70311200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:70306600-70310600	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr14:70307200-70310800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr14:70307600-70311200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr14:70307800-70310600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:70308000-70310400	Enhancers	H1 Cell Line	embryonic stem cell
7	chr14:70308200-70311200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr14:70309400-70312600	Enhancers	Brain Germinal Matrix	brain
9	chr14:70310000-70310600	Enhancers	HMEC	breast
10	chr14:70310000-70310800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr14:70310000-70315000	Enhancers	HepG2	liver
12	chr14:70310200-70310400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr14:70310200-70316200	Weak transcription	Fetal Brain Female	brain

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