Variant report

Variant	rs61986171
Chromosome Location	chr14:106166653-106166654
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10144746	0.87[AFR][1000 genomes]
rs12896746	0.84[ASN][1000 genomes]
rs12896897	0.84[ASN][1000 genomes]
rs2516747	0.87[AFR][1000 genomes]
rs2516751	0.87[AFR][1000 genomes]
rs2516752	0.87[AFR][1000 genomes]
rs34398108	0.80[ASN][1000 genomes]
rs34678053	0.87[AFR][1000 genomes]
rs61986170	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7143677	0.84[ASN][1000 genomes]
rs7145407	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs61986171	IGHJ6	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:106163600-106167200	Weak transcription	Placenta	Placenta
2	chr14:106165400-106169400	Enhancers	Primary B cells from cord blood	blood
3	chr14:106166000-106169200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr14:106166200-106167400	Flanking Active TSS	GM12878-XiMat	blood
5	chr14:106166200-106169400	Genic enhancers	Primary B cells from peripheral blood	blood
6	chr14:106166200-106174600	Weak transcription	Spleen	Spleen

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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