Variant report

Variant	rs61987854
Chromosome Location	chr14:65749397-65749398
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65748171..65751140-chr14:65753934..65755557,2	MCF-7	breast:

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10135541	1.00[ASN][1000 genomes]
rs11844089	1.00[ASN][1000 genomes]
rs11844728	1.00[ASN][1000 genomes]
rs1270537	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1272725	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17102714	1.00[ASN][1000 genomes]
rs2151756	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2153482	1.00[ASN][1000 genomes]
rs4902378	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4902379	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902380	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902384	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55714222	1.00[ASN][1000 genomes]
rs55759426	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55780087	1.00[ASN][1000 genomes]
rs55865853	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55888656	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55911819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55917158	1.00[ASN][1000 genomes]
rs55948453	1.00[ASN][1000 genomes]
rs56030127	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56152095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56158541	1.00[ASN][1000 genomes]
rs56348725	1.00[ASN][1000 genomes]
rs61987805	1.00[ASN][1000 genomes]
rs61987837	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987838	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987841	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987846	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987851	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987853	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987857	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987858	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987859	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61988960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61988961	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61988962	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61988963	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61988964	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61988965	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61988967	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61988970	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989027	1.00[ASN][1000 genomes]
rs61989030	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61989032	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989036	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989057	1.00[ASN][1000 genomes]
rs61989059	1.00[ASN][1000 genomes]
rs61989961	1.00[ASN][1000 genomes]
rs61989962	1.00[ASN][1000 genomes]
rs61989963	1.00[ASN][1000 genomes]
rs61989964	1.00[ASN][1000 genomes]
rs61989969	1.00[ASN][1000 genomes]
rs61989970	1.00[ASN][1000 genomes]
rs61989971	1.00[ASN][1000 genomes]
rs61989973	1.00[ASN][1000 genomes]
rs61989974	1.00[ASN][1000 genomes]
rs61989975	1.00[ASN][1000 genomes]
rs61989977	1.00[ASN][1000 genomes]
rs61989993	1.00[ASN][1000 genomes]
rs61989998	1.00[ASN][1000 genomes]
rs61990000	1.00[ASN][1000 genomes]
rs6573606	1.00[ASN][1000 genomes]
rs7147344	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7150782	1.00[ASN][1000 genomes]
rs7152470	0.81[EUR][1000 genomes]
rs7156029	1.00[ASN][1000 genomes]
rs7159582	1.00[ASN][1000 genomes]
rs7161058	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs746835	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs747540	1.00[ASN][1000 genomes]
rs8004507	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8005892	1.00[ASN][1000 genomes]
rs8013585	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv832818	chr14:65706859-65882320	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
4	nsv515522	chr14:65746566-65771110	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65727400-65749600	Weak transcription	Gastric	stomach
2	chr14:65747600-65749400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:65747600-65758400	Weak transcription	Pancreas	Pancrea
4	chr14:65748400-65749800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr14:65748400-65752200	Enhancers	Primary B cells from peripheral blood	blood
6	chr14:65748600-65749400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr14:65748600-65749400	Flanking Active TSS	Primary B cells from cord blood	blood
8	chr14:65748600-65749400	Flanking Active TSS	Primary hematopoietic stem cells	blood
9	chr14:65748600-65749400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
10	chr14:65748600-65749400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr14:65748600-65749600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr14:65748600-65749600	Enhancers	Fetal Intestine Small	intestine
13	chr14:65748600-65749600	Enhancers	A549	lung
14	chr14:65748600-65749800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr14:65748600-65749800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr14:65748600-65749800	Flanking Active TSS	Primary T cells from cord blood	blood
17	chr14:65748600-65749800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
18	chr14:65748600-65749800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
19	chr14:65748600-65749800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr14:65748600-65749800	Flanking Active TSS	Brain Hippocampus Middle	brain
21	chr14:65748600-65749800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
22	chr14:65748600-65749800	Flanking Active TSS	Duodenum Mucosa	Duodenum
23	chr14:65748600-65749800	Enhancers	Fetal Brain Male	brain
24	chr14:65748600-65750000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
25	chr14:65748600-65750000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
26	chr14:65748600-65750000	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
27	chr14:65748600-65750000	Flanking Active TSS	NHDF-Ad	bronchial
28	chr14:65748600-65750200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr14:65748600-65750200	Flanking Active TSS	Brain Cingulate Gyrus	brain
30	chr14:65748600-65750200	Enhancers	NHLF	lung
31	chr14:65748600-65750400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
32	chr14:65748600-65750400	Enhancers	Small Intestine	intestine
33	chr14:65748600-65750400	Enhancers	Thymus	Thymus
34	chr14:65748600-65750400	Flanking Active TSS	GM12878-XiMat	blood
35	chr14:65748600-65750800	Enhancers	Fetal Thymus	thymus
36	chr14:65748800-65749400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
37	chr14:65748800-65749600	Enhancers	Lung	lung
38	chr14:65748800-65749600	Enhancers	HepG2	liver
39	chr14:65748800-65749800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr14:65748800-65749800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr14:65748800-65749800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
42	chr14:65748800-65749800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
43	chr14:65748800-65749800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
44	chr14:65748800-65749800	Flanking Active TSS	Brain Germinal Matrix	brain
45	chr14:65748800-65749800	Flanking Active TSS	Stomach Mucosa	stomach
46	chr14:65748800-65750000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr14:65748800-65750000	Enhancers	H9 Cell Line	embryonic stem cell
48	chr14:65748800-65750000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr14:65748800-65750000	Enhancers	HMEC	breast
50	chr14:65748800-65750000	Flanking Active TSS	NH-A	brain

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