Variant report

Variant	rs61987857
Chromosome Location	chr14:65749972-65749973
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65748171..65751140-chr14:65753934..65755557,2	MCF-7	breast:

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10135541	1.00[ASN][1000 genomes]
rs11844089	1.00[ASN][1000 genomes]
rs11844728	1.00[ASN][1000 genomes]
rs1270537	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1272725	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17102714	1.00[ASN][1000 genomes]
rs2151756	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2153482	1.00[ASN][1000 genomes]
rs4902378	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4902379	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902380	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902384	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55714222	1.00[ASN][1000 genomes]
rs55759426	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55780087	1.00[ASN][1000 genomes]
rs55865853	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55888656	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55911819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55917158	1.00[ASN][1000 genomes]
rs55948453	1.00[ASN][1000 genomes]
rs56030127	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56152095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56158541	1.00[ASN][1000 genomes]
rs56348725	1.00[ASN][1000 genomes]
rs61987805	1.00[ASN][1000 genomes]
rs61987837	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987838	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987841	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987846	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987851	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987853	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987858	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987859	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61988960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61988961	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61988962	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61988963	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61988964	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61988965	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61988967	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61988970	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989027	1.00[ASN][1000 genomes]
rs61989030	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61989032	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989036	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989057	1.00[ASN][1000 genomes]
rs61989059	1.00[ASN][1000 genomes]
rs61989961	1.00[ASN][1000 genomes]
rs61989962	1.00[ASN][1000 genomes]
rs61989963	1.00[ASN][1000 genomes]
rs61989964	1.00[ASN][1000 genomes]
rs61989969	1.00[ASN][1000 genomes]
rs61989970	1.00[ASN][1000 genomes]
rs61989971	1.00[ASN][1000 genomes]
rs61989973	1.00[ASN][1000 genomes]
rs61989974	1.00[ASN][1000 genomes]
rs61989975	1.00[ASN][1000 genomes]
rs61989977	1.00[ASN][1000 genomes]
rs61989993	1.00[ASN][1000 genomes]
rs61989998	1.00[ASN][1000 genomes]
rs61990000	1.00[ASN][1000 genomes]
rs61990023	1.00[ASN][1000 genomes]
rs6573606	1.00[ASN][1000 genomes]
rs7147344	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7150782	1.00[ASN][1000 genomes]
rs7152470	0.81[EUR][1000 genomes]
rs7156029	1.00[ASN][1000 genomes]
rs7159582	1.00[ASN][1000 genomes]
rs7161058	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs746835	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs747540	1.00[ASN][1000 genomes]
rs8004507	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8005892	1.00[ASN][1000 genomes]
rs8013585	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv832818	chr14:65706859-65882320	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
4	nsv515522	chr14:65746566-65771110	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65747600-65758400	Weak transcription	Pancreas	Pancrea
2	chr14:65748400-65752200	Enhancers	Primary B cells from peripheral blood	blood
3	chr14:65748600-65750000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
4	chr14:65748600-65750000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
5	chr14:65748600-65750000	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
6	chr14:65748600-65750000	Flanking Active TSS	NHDF-Ad	bronchial
7	chr14:65748600-65750200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr14:65748600-65750200	Flanking Active TSS	Brain Cingulate Gyrus	brain
9	chr14:65748600-65750200	Enhancers	NHLF	lung
10	chr14:65748600-65750400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
11	chr14:65748600-65750400	Enhancers	Small Intestine	intestine
12	chr14:65748600-65750400	Enhancers	Thymus	Thymus
13	chr14:65748600-65750400	Flanking Active TSS	GM12878-XiMat	blood
14	chr14:65748600-65750800	Enhancers	Fetal Thymus	thymus
15	chr14:65748800-65750000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr14:65748800-65750000	Enhancers	H9 Cell Line	embryonic stem cell
17	chr14:65748800-65750000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr14:65748800-65750000	Enhancers	HMEC	breast
19	chr14:65748800-65750000	Flanking Active TSS	NH-A	brain
20	chr14:65748800-65750000	Enhancers	NHEK	skin
21	chr14:65748800-65750200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr14:65748800-65750200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr14:65748800-65750200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
24	chr14:65748800-65750200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr14:65748800-65750200	Flanking Active TSS	Osteobl	bone
26	chr14:65748800-65750400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
27	chr14:65748800-65750400	Enhancers	Fetal Stomach	stomach
28	chr14:65748800-65750400	Enhancers	Placenta Amnion	Placenta Amnion
29	chr14:65748800-65750400	Enhancers	HSMM	muscle
30	chr14:65748800-65751000	Enhancers	Spleen	Spleen
31	chr14:65748800-65751400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr14:65748800-65751400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
33	chr14:65749000-65750000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr14:65749000-65750000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr14:65749000-65750400	Flanking Active TSS	Brain Substantia Nigra	brain
36	chr14:65749000-65750600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr14:65749000-65750600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
38	chr14:65749000-65750600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
39	chr14:65749200-65750400	Enhancers	Sigmoid Colon	Sigmoid Colon
40	chr14:65749200-65751000	Enhancers	Primary T cells fromperipheralblood	blood
41	chr14:65749200-65751200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
42	chr14:65749400-65750200	Enhancers	HUES48 Cell Line	embryonic stem cell
43	chr14:65749400-65750200	Enhancers	HUES6 Cell Line	embryonic stem cell
44	chr14:65749400-65750200	Enhancers	iPS-15b Cell Line	embryonic stem cell
45	chr14:65749400-65750600	Enhancers	Primary hematopoietic stem cells	blood
46	chr14:65749400-65750600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
47	chr14:65749400-65751000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr14:65749400-65752200	Enhancers	Primary B cells from cord blood	blood
49	chr14:65749600-65750000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr14:65749600-65750000	Enhancers	Rectal Smooth Muscle	rectum

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