Variant report

Variant	rs61988960
Chromosome Location	chr14:65750659-65750660
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65748171..65751140-chr14:65753934..65755557,2	MCF-7	breast:

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10135541	1.00[ASN][1000 genomes]
rs11844089	1.00[ASN][1000 genomes]
rs11844728	1.00[ASN][1000 genomes]
rs1270537	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1272725	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17102714	1.00[ASN][1000 genomes]
rs2151756	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2153482	1.00[ASN][1000 genomes]
rs4902378	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4902379	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902380	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902384	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55714222	1.00[ASN][1000 genomes]
rs55759426	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55780087	1.00[ASN][1000 genomes]
rs55865853	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55888656	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55911819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55917158	1.00[ASN][1000 genomes]
rs55948453	1.00[ASN][1000 genomes]
rs56030127	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56152095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56158541	1.00[ASN][1000 genomes]
rs56348725	1.00[ASN][1000 genomes]
rs61987805	1.00[ASN][1000 genomes]
rs61987837	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987838	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987841	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987846	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987851	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987853	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987857	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987858	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987859	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61988961	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61988962	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61988963	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61988964	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61988965	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61988967	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61988970	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989027	1.00[ASN][1000 genomes]
rs61989030	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989032	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989036	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989057	1.00[ASN][1000 genomes]
rs61989059	1.00[ASN][1000 genomes]
rs61989961	1.00[ASN][1000 genomes]
rs61989962	1.00[ASN][1000 genomes]
rs61989963	1.00[ASN][1000 genomes]
rs61989964	1.00[ASN][1000 genomes]
rs61989969	1.00[ASN][1000 genomes]
rs61989970	1.00[ASN][1000 genomes]
rs61989971	1.00[ASN][1000 genomes]
rs61989973	1.00[ASN][1000 genomes]
rs61989974	1.00[ASN][1000 genomes]
rs61989975	1.00[ASN][1000 genomes]
rs61989977	1.00[ASN][1000 genomes]
rs61989993	1.00[ASN][1000 genomes]
rs61989998	1.00[ASN][1000 genomes]
rs61990000	1.00[ASN][1000 genomes]
rs61990023	1.00[ASN][1000 genomes]
rs6573606	1.00[ASN][1000 genomes]
rs7147344	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7150782	1.00[ASN][1000 genomes]
rs7152470	0.83[EUR][1000 genomes]
rs7156029	1.00[ASN][1000 genomes]
rs7159582	1.00[ASN][1000 genomes]
rs7161058	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs746835	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs747540	1.00[ASN][1000 genomes]
rs8004507	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8005892	1.00[ASN][1000 genomes]
rs8013585	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv832818	chr14:65706859-65882320	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
4	nsv515522	chr14:65746566-65771110	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65747600-65758400	Weak transcription	Pancreas	Pancrea
2	chr14:65748400-65752200	Enhancers	Primary B cells from peripheral blood	blood
3	chr14:65748600-65750800	Enhancers	Fetal Thymus	thymus
4	chr14:65748800-65751000	Enhancers	Spleen	Spleen
5	chr14:65748800-65751400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr14:65748800-65751400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr14:65749200-65751000	Enhancers	Primary T cells fromperipheralblood	blood
8	chr14:65749200-65751200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr14:65749400-65751000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr14:65749400-65752200	Enhancers	Primary B cells from cord blood	blood
11	chr14:65749600-65753800	Weak transcription	Right Ventricle	heart
12	chr14:65749800-65751200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr14:65749800-65751200	Enhancers	Stomach Mucosa	stomach
14	chr14:65749800-65752200	Enhancers	Brain Angular Gyrus	brain
15	chr14:65749800-65752200	Enhancers	Brain Hippocampus Middle	brain
16	chr14:65749800-65752200	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr14:65749800-65752600	Enhancers	Primary T cells from cord blood	blood
18	chr14:65749800-65753600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr14:65749800-65753800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr14:65749800-65753800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr14:65749800-65753800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr14:65749800-65753800	Weak transcription	Dnd41	blood
23	chr14:65749800-65754400	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr14:65750000-65751000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr14:65750000-65751400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr14:65750000-65754600	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr14:65750000-65757800	Weak transcription	NHEK	skin
28	chr14:65750200-65751400	Weak transcription	NHLF	lung
29	chr14:65750200-65751800	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr14:65750200-65752600	Enhancers	Brain Cingulate Gyrus	brain
31	chr14:65750200-65753200	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr14:65750200-65754000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr14:65750400-65750800	Enhancers	Primary T helper naive cells from peripheral blood	blood
34	chr14:65750400-65750800	Weak transcription	Brain Anterior Caudate	brain
35	chr14:65750400-65751400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr14:65750400-65751400	Enhancers	Primary T helper cells PMA-I stimulated	--
37	chr14:65750400-65752000	Enhancers	Stomach Smooth Muscle	stomach
38	chr14:65750400-65752200	Enhancers	Brain Substantia Nigra	brain
39	chr14:65750400-65752400	Weak transcription	HSMMtube	muscle
40	chr14:65750400-65752600	Enhancers	GM12878-XiMat	blood
41	chr14:65750400-65753200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr14:65750400-65753200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr14:65750400-65753200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr14:65750400-65753200	Weak transcription	Thymus	Thymus
45	chr14:65750400-65753400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr14:65750400-65753800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr14:65750400-65753800	Weak transcription	Gastric	stomach
48	chr14:65750400-65754000	Weak transcription	Duodenum Mucosa	Duodenum
49	chr14:65750400-65754200	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr14:65750400-65754400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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