Variant report

Variant	rs61989037
Chromosome Location	chr14:65801099-65801100
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65687538..65689210-chr14:65800729..65803430,2	MCF-7	breast:
2	chr14:65794502..65796026-chr14:65798643..65801165,2	MCF-7	breast:
3	chr14:65799114..65802639-chr14:65877920..65880470,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255002	Chromatin interaction
ENSG00000033170	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs55975167	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61989035	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61989991	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61989999	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv832818	chr14:65706859-65882320	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
4	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
5	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65795400-65804600	Enhancers	Primary B cells from peripheral blood	blood
2	chr14:65796000-65807200	Enhancers	Placenta	Placenta
3	chr14:65797000-65801200	Weak transcription	Spleen	Spleen
4	chr14:65798000-65803000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:65798400-65802600	Enhancers	Primary hematopoietic stem cells	blood
6	chr14:65798400-65803400	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr14:65798600-65801200	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr14:65798600-65802400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr14:65798800-65802200	Enhancers	Small Intestine	intestine
10	chr14:65798800-65802600	Enhancers	Primary B cells from cord blood	blood
11	chr14:65798800-65803000	Enhancers	GM12878-XiMat	blood
12	chr14:65799000-65801200	Enhancers	NHDF-Ad	bronchial
13	chr14:65799000-65802200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr14:65799000-65803400	Enhancers	Adipose Nuclei	Adipose
15	chr14:65799200-65803400	Enhancers	NHEK	skin
16	chr14:65799200-65805400	Enhancers	Fetal Intestine Large	intestine
17	chr14:65799400-65801200	Enhancers	Duodenum Mucosa	Duodenum
18	chr14:65799400-65804200	Enhancers	Stomach Mucosa	stomach
19	chr14:65799600-65801200	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr14:65799800-65803400	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr14:65800200-65801200	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr14:65800200-65803400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr14:65800200-65805400	Enhancers	Fetal Intestine Small	intestine
24	chr14:65800400-65803000	Enhancers	NH-A	brain
25	chr14:65800400-65803200	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr14:65800600-65801200	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
27	chr14:65800600-65801400	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
28	chr14:65800600-65801400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr14:65800600-65801400	Enhancers	Rectal Mucosa Donor 31	rectum
30	chr14:65800600-65801600	Enhancers	Colonic Mucosa	Colon
31	chr14:65800600-65801800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr14:65800600-65802600	Enhancers	Fetal Muscle Leg	muscle
33	chr14:65800600-65803400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr14:65800600-65804000	Enhancers	Fetal Thymus	thymus
35	chr14:65800600-65804200	Enhancers	Primary T cells from cord blood	blood
36	chr14:65800800-65801200	Weak transcription	Gastric	stomach
37	chr14:65800800-65801200	Enhancers	Rectal Smooth Muscle	rectum
38	chr14:65800800-65801400	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
39	chr14:65800800-65801400	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr14:65800800-65801400	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr14:65800800-65801400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
42	chr14:65800800-65801400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr14:65800800-65801400	Enhancers	HMEC	breast
44	chr14:65800800-65801600	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
45	chr14:65800800-65801600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr14:65800800-65801600	Flanking Active TSS	Colon Smooth Muscle	Colon
47	chr14:65800800-65801600	Enhancers	Esophagus	oesophagus
48	chr14:65800800-65801600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
49	chr14:65800800-65801800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr14:65800800-65801800	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell

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