Variant report

Variant	rs61989042
Chromosome Location	chr14:66307111-66307112
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:66295863..66298342-chr14:66306411..66309225,2	MCF-7	breast:
2	chr14:66306305..66308376-chr14:66309339..66311609,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs55871008	1.00[ASN][1000 genomes]
rs61989044	1.00[ASN][1000 genomes]
rs61990006	1.00[ASN][1000 genomes]
rs61990009	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61990010	1.00[ASN][1000 genomes]
rs61990011	1.00[ASN][1000 genomes]
rs61990013	1.00[ASN][1000 genomes]
rs7149529	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
2	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
4	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
5	nsv1045000	chr14:66010886-66372518	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1042671	chr14:66010886-66399888	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv817409	chr14:66220075-66990168	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
8	nsv1052389	chr14:66255781-66321562	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1038849	chr14:66259700-66329919	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv564953	chr14:66287921-67046960	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:66300400-66307200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr14:66302200-66313800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr14:66303600-66308200	Enhancers	Primary T cells fromperipheralblood	blood
4	chr14:66304000-66307800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr14:66304000-66308000	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr14:66304200-66307400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr14:66304200-66307600	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr14:66304200-66307800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr14:66304200-66308200	Enhancers	Dnd41	blood
10	chr14:66304200-66308600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr14:66304400-66307600	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr14:66304400-66307800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr14:66304400-66308000	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr14:66304600-66307600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr14:66305000-66309800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr14:66305400-66307200	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr14:66305400-66307400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
18	chr14:66305400-66307600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr14:66305600-66308200	Enhancers	Lung	lung
20	chr14:66306400-66307600	Enhancers	Fetal Muscle Leg	muscle
21	chr14:66306400-66307800	Enhancers	Fetal Heart	heart
22	chr14:66306400-66308000	Enhancers	Fetal Muscle Trunk	muscle
23	chr14:66306600-66307400	Enhancers	Esophagus	oesophagus
24	chr14:66306600-66307600	Enhancers	Left Ventricle	heart
25	chr14:66306600-66307800	Enhancers	Brain Germinal Matrix	brain
26	chr14:66306600-66308200	Enhancers	Pancreas	Pancrea
27	chr14:66306800-66307600	Enhancers	Right Atrium	heart
28	chr14:66306800-66307600	Enhancers	Right Ventricle	heart
29	chr14:66306800-66308000	Enhancers	Colon Smooth Muscle	Colon
30	chr14:66306800-66309800	Weak transcription	Fetal Thymus	thymus
31	chr14:66307000-66308200	Enhancers	Placenta	Placenta
32	chr14:66307000-66309200	Weak transcription	Primary T cells from cord blood	blood

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