Variant report

Variant	rs61989800
Chromosome Location	chr14:65687548-65687549
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1123493	0.84[EUR][1000 genomes]
rs17102508	0.86[ASN][1000 genomes]
rs55722250	0.83[AMR][1000 genomes]
rs55867601	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55890029	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56116751	0.84[EUR][1000 genomes]
rs58250564	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989801	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989804	0.83[AMR][1000 genomes]
rs61989805	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7141109	1.00[ASN][1000 genomes]
rs7153564	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7155037	0.86[EUR][1000 genomes]
rs7159202	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv564932	chr14:65660502-65691545	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv564933	chr14:65667546-65710580	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65672800-65691400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:65674000-65691400	Weak transcription	Thymus	Thymus
3	chr14:65678600-65690600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr14:65682000-65689200	Weak transcription	Right Atrium	heart
5	chr14:65682200-65688200	Weak transcription	Primary B cells from peripheral blood	blood
6	chr14:65683800-65688800	Weak transcription	Brain Angular Gyrus	brain
7	chr14:65683800-65688800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr14:65684000-65688200	Weak transcription	Brain Hippocampus Middle	brain
9	chr14:65684000-65688400	Weak transcription	Brain Anterior Caudate	brain
10	chr14:65684200-65688200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr14:65684200-65689000	Weak transcription	Brain Substantia Nigra	brain
12	chr14:65684400-65689400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr14:65686400-65691400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr14:65687000-65687800	Enhancers	Fetal Intestine Large	intestine
15	chr14:65687200-65691600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr14:65687400-65689000	Weak transcription	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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