Variant report

Variant	rs61989961
Chromosome Location	chr14:65815107-65815108
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65809666..65811577-chr14:65812664..65815660,3	MCF-7	breast:
2	chr14:65810503..65812157-chr14:65814599..65816417,2	K562	blood:
3	chr14:65694309..65696464-chr14:65814851..65817845,2	MCF-7	breast:
4	chr14:65813667..65817419-chr14:65818159..65821659,6	MCF-7	breast:

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10135541	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10138701	1.00[ASN][1000 genomes]
rs11844089	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11844728	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11846860	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11849408	1.00[ASN][1000 genomes]
rs11852179	1.00[ASN][1000 genomes]
rs1270537	1.00[ASN][1000 genomes]
rs1272725	1.00[ASN][1000 genomes]
rs17102714	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17102760	1.00[ASN][1000 genomes]
rs2151756	1.00[ASN][1000 genomes]
rs2153482	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902378	1.00[ASN][1000 genomes]
rs4902379	1.00[ASN][1000 genomes]
rs4902380	1.00[ASN][1000 genomes]
rs4902381	1.00[ASN][1000 genomes]
rs4902384	1.00[ASN][1000 genomes]
rs55714222	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55759426	1.00[ASN][1000 genomes]
rs55780087	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55793205	1.00[ASN][1000 genomes]
rs55865853	1.00[ASN][1000 genomes]
rs55888656	1.00[ASN][1000 genomes]
rs55911819	1.00[ASN][1000 genomes]
rs55917158	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55948453	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56030127	1.00[ASN][1000 genomes]
rs56152095	1.00[ASN][1000 genomes]
rs56158541	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56191137	1.00[ASN][1000 genomes]
rs56348725	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56682283	1.00[ASN][1000 genomes]
rs61987805	1.00[ASN][1000 genomes]
rs61987837	1.00[ASN][1000 genomes]
rs61987838	1.00[ASN][1000 genomes]
rs61987841	1.00[ASN][1000 genomes]
rs61987844	1.00[ASN][1000 genomes]
rs61987845	1.00[ASN][1000 genomes]
rs61987846	1.00[ASN][1000 genomes]
rs61987847	1.00[ASN][1000 genomes]
rs61987851	1.00[ASN][1000 genomes]
rs61987852	1.00[ASN][1000 genomes]
rs61987853	1.00[ASN][1000 genomes]
rs61987854	1.00[ASN][1000 genomes]
rs61987855	1.00[ASN][1000 genomes]
rs61987856	1.00[ASN][1000 genomes]
rs61987857	1.00[ASN][1000 genomes]
rs61987858	1.00[ASN][1000 genomes]
rs61987859	1.00[ASN][1000 genomes]
rs61987981	1.00[ASN][1000 genomes]
rs61988960	1.00[ASN][1000 genomes]
rs61988961	1.00[ASN][1000 genomes]
rs61988962	1.00[ASN][1000 genomes]
rs61988967	1.00[ASN][1000 genomes]
rs61988970	1.00[ASN][1000 genomes]
rs61989027	1.00[ASN][1000 genomes]
rs61989030	1.00[ASN][1000 genomes]
rs61989032	1.00[ASN][1000 genomes]
rs61989036	1.00[ASN][1000 genomes]
rs61989057	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989059	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989962	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989963	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989964	1.00[ASN][1000 genomes]
rs61989967	0.92[EUR][1000 genomes]
rs61989969	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989970	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989971	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989973	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989974	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989975	1.00[ASN][1000 genomes]
rs61989977	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989993	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989998	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61990000	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61990002	0.81[EUR][1000 genomes]
rs61990023	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61990026	1.00[ASN][1000 genomes]
rs61990027	1.00[ASN][1000 genomes]
rs6573606	1.00[ASN][1000 genomes]
rs7143112	1.00[ASN][1000 genomes]
rs7147344	1.00[ASN][1000 genomes]
rs7150782	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7156029	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7159582	1.00[ASN][1000 genomes]
rs7160754	0.89[EUR][1000 genomes]
rs7161058	1.00[ASN][1000 genomes]
rs746835	1.00[ASN][1000 genomes]
rs747540	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8003093	1.00[ASN][1000 genomes]
rs8004507	1.00[ASN][1000 genomes]
rs8005892	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8013585	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8018695	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832818	chr14:65706859-65882320	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
3	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
5	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65803400-65821000	Weak transcription	Esophagus	oesophagus
2	chr14:65812000-65822800	Weak transcription	Gastric	stomach
3	chr14:65812800-65816600	Enhancers	Fetal Intestine Large	intestine
4	chr14:65813200-65815400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr14:65813200-65815600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr14:65813200-65816200	Enhancers	Placenta	Placenta
7	chr14:65813200-65816200	Enhancers	Ovary	ovary
8	chr14:65813800-65815200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr14:65813800-65818000	Weak transcription	GM12878-XiMat	blood
10	chr14:65813800-65821200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr14:65813800-65823600	Weak transcription	Thymus	Thymus
12	chr14:65814000-65821400	Weak transcription	Brain Cingulate Gyrus	brain
13	chr14:65814000-65823400	Weak transcription	Small Intestine	intestine
14	chr14:65814000-65824800	Weak transcription	Primary hematopoietic stem cells	blood
15	chr14:65814200-65815200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr14:65814200-65816800	Weak transcription	Primary B cells from cord blood	blood
17	chr14:65814200-65819600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr14:65814200-65822200	Weak transcription	Primary T cells from cord blood	blood
19	chr14:65814400-65815800	Weak transcription	Fetal Intestine Small	intestine
20	chr14:65814600-65815200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr14:65814600-65815200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr14:65814600-65815400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr14:65814600-65816000	Enhancers	Pancreas	Pancrea
24	chr14:65814800-65815800	Weak transcription	Lung	lung
25	chr14:65814800-65816800	Weak transcription	Primary B cells from peripheral blood	blood
26	chr14:65814800-65817400	Enhancers	K562	blood
27	chr14:65814800-65820800	Weak transcription	Duodenum Mucosa	Duodenum
28	chr14:65814800-65823200	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr14:65815000-65815200	Enhancers	Fetal Muscle Leg	muscle
30	chr14:65815000-65815400	Enhancers	Brain Angular Gyrus	brain
31	chr14:65815000-65815400	Enhancers	Brain Hippocampus Middle	brain
32	chr14:65815000-65819600	Weak transcription	Stomach Mucosa	stomach

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