Variant report

Variant	rs61989999
Chromosome Location	chr14:65917660-65917661
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65906469..65908024-chr14:65917228..65919311,2	MCF-7	breast:
2	chr14:65912946..65915806-chr14:65916268..65918794,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs55975167	0.84[EUR][1000 genomes]
rs61989035	0.84[EUR][1000 genomes]
rs61989037	0.84[EUR][1000 genomes]
rs61989960	0.89[EUR][1000 genomes]
rs61989991	1.00[EUR][1000 genomes]
rs61990022	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65892800-65929600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr14:65897000-65925600	Weak transcription	Aorta	Aorta
3	chr14:65898400-65935600	Weak transcription	Gastric	stomach
4	chr14:65899600-65929000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr14:65901200-65917800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr14:65901200-65920200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr14:65901800-65920200	Weak transcription	Brain Hippocampus Middle	brain
8	chr14:65902200-65927000	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr14:65902400-65928400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr14:65903000-65917800	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr14:65903200-65922600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr14:65903200-65925200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr14:65905600-65918000	Weak transcription	Primary T cells from cord blood	blood
14	chr14:65905800-65918000	Weak transcription	Primary hematopoietic stem cells	blood
15	chr14:65905800-65936600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr14:65906000-65923800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr14:65906000-65926800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr14:65906200-65919800	Weak transcription	Ovary	ovary
19	chr14:65906200-65922000	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr14:65906600-65922800	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr14:65907000-65920400	Weak transcription	K562	blood
22	chr14:65911200-65917800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr14:65911200-65942400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr14:65912200-65917800	Weak transcription	Fetal Intestine Large	intestine
25	chr14:65912200-65922400	Weak transcription	Duodenum Mucosa	Duodenum
26	chr14:65913000-65924000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr14:65913200-65920200	Weak transcription	Brain Cingulate Gyrus	brain
28	chr14:65913200-65920400	Weak transcription	Fetal Lung	lung
29	chr14:65913200-65922400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr14:65913200-65927000	Weak transcription	NH-A	brain
31	chr14:65913200-65928000	Weak transcription	Osteobl	bone
32	chr14:65913400-65918400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr14:65913600-65920400	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr14:65913800-65920200	Weak transcription	Brain Angular Gyrus	brain
35	chr14:65913800-65920200	Weak transcription	Small Intestine	intestine
36	chr14:65913800-65922800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr14:65913800-65928000	Weak transcription	HUVEC	blood vessel
38	chr14:65913800-65942400	Weak transcription	Left Ventricle	heart
39	chr14:65914200-65922400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr14:65914600-65925000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr14:65915600-65928200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr14:65916000-65918800	ZNF genes & repeats	Dnd41	blood
43	chr14:65916000-65919400	ZNF genes & repeats	GM12878-XiMat	blood
44	chr14:65916400-65919000	Weak transcription	Brain Substantia Nigra	brain
45	chr14:65916600-65917800	Weak transcription	Primary B cells from peripheral blood	blood
46	chr14:65916600-65917800	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr14:65916600-65922600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr14:65916600-65923000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr14:65917200-65936600	Weak transcription	Pancreas	Pancrea
50	chr14:65917400-65918400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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