Variant report

Variant	rs61997169
Chromosome Location	chr11:63174050-63174051
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11231450	0.91[AFR][1000 genomes]
rs11820135	1.00[EUR][1000 genomes]
rs475053	1.00[EUR][1000 genomes]
rs501594	1.00[EUR][1000 genomes]
rs507893	1.00[EUR][1000 genomes]
rs55813757	1.00[EUR][1000 genomes]
rs56867396	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57247740	1.00[EUR][1000 genomes]
rs57518967	1.00[EUR][1000 genomes]
rs577327	1.00[EUR][1000 genomes]
rs597483	1.00[EUR][1000 genomes]
rs60168208	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60590185	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60645099	1.00[EUR][1000 genomes]
rs655995	1.00[EUR][1000 genomes]
rs7103797	1.00[EUR][1000 genomes]
rs7123161	1.00[EUR][1000 genomes]
rs7128461	1.00[EUR][1000 genomes]
rs7935128	1.00[EUR][1000 genomes]
rs7939687	1.00[EUR][1000 genomes]
rs7942307	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv1053585	chr11:63057767-63180308	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv555178	chr11:63078742-63197930	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv1822068	chr11:63146055-63239984	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1053627	chr11:63160057-63183395	Flanking Active TSS Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3434037	chr11:63170556-63217699	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63173000-63175200	Weak transcription	Adipose Nuclei	Adipose
2	chr11:63173200-63174600	Weak transcription	Liver	Liver
3	chr11:63173200-63176600	Weak transcription	HepG2	liver
4	chr11:63173800-63174200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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