Variant report

Variant	rs62007859
Chromosome Location	chr15:78614899-78614900
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:78614726..78616366-chr15:78729558..78731110,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136381	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11630206	0.95[ASN][1000 genomes]
rs62010360	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8037145	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
3	nsv833063	chr15:78605215-78754945	Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1052910	chr15:78608637-78707049	Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78601400-78616800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:78610000-78617600	Weak transcription	Fetal Intestine Large	intestine
3	chr15:78610600-78618200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr15:78611000-78618200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr15:78612000-78615800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr15:78612800-78615800	Enhancers	Fetal Muscle Leg	muscle
7	chr15:78612800-78616200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:78612800-78618600	Enhancers	Fetal Stomach	stomach
9	chr15:78613200-78616800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr15:78613400-78615400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr15:78613400-78615400	Enhancers	Placenta	Placenta
12	chr15:78613400-78615600	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr15:78613400-78615800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr15:78613400-78617000	Enhancers	H1 Cell Line	embryonic stem cell
15	chr15:78613400-78618200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr15:78613600-78615200	Enhancers	H9 Cell Line	embryonic stem cell
17	chr15:78613600-78615600	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr15:78613600-78616200	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr15:78613600-78616400	Enhancers	Fetal Muscle Trunk	muscle
20	chr15:78613800-78615600	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr15:78613800-78615800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr15:78613800-78616000	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr15:78614000-78615600	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr15:78614000-78616000	Enhancers	HUVEC	blood vessel
25	chr15:78614200-78615200	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr15:78614200-78615400	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr15:78614200-78615800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
28	chr15:78614200-78615800	Enhancers	Lung	lung
29	chr15:78614400-78615000	Enhancers	Fetal Brain Male	brain
30	chr15:78614400-78615000	Enhancers	A549	lung
31	chr15:78614400-78615200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr15:78614400-78615200	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr15:78614400-78615200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr15:78614400-78615200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr15:78614400-78615200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr15:78614400-78615200	Enhancers	Fetal Lung	lung
37	chr15:78614400-78615400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr15:78614400-78615400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr15:78614400-78615400	Enhancers	Adipose Nuclei	Adipose
40	chr15:78614400-78615600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
41	chr15:78614600-78615200	Enhancers	Fetal Brain Female	brain
42	chr15:78614600-78615400	Weak transcription	Left Ventricle	heart
43	chr15:78614600-78615400	Enhancers	NHDF-Ad	bronchial
44	chr15:78614600-78615800	Enhancers	Brain Germinal Matrix	brain
45	chr15:78614600-78615800	Enhancers	Fetal Kidney	kidney
46	chr15:78614600-78617600	Weak transcription	Right Ventricle	heart
47	chr15:78614800-78615000	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
48	chr15:78614800-78615000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr15:78614800-78615000	Bivalent/Poised TSS	HepG2	liver
50	chr15:78614800-78615200	Flanking Active TSS	NH-A	brain

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