Variant report

Variant	rs62008411
Chromosome Location	chr15:77509207-77509208
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs62007214	1.00[AFR][1000 genomes]
rs62008424	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv1045376	chr15:77354671-77801487	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv542443	chr15:77354671-77801487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	esv1832234	chr15:77451350-77694607	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
7	nsv1041064	chr15:77497903-77631698	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77473600-77527800	Weak transcription	Placenta	Placenta
2	chr15:77480400-77528000	Weak transcription	Fetal Stomach	stomach
3	chr15:77482200-77528000	Weak transcription	Spleen	Spleen
4	chr15:77484000-77518800	Weak transcription	Colon Smooth Muscle	Colon
5	chr15:77487400-77516800	Weak transcription	Fetal Heart	heart
6	chr15:77491800-77510600	Weak transcription	Primary B cells from peripheral blood	blood
7	chr15:77492000-77516600	Weak transcription	NH-A	brain
8	chr15:77492000-77517000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr15:77492200-77509400	Weak transcription	Ovary	ovary
10	chr15:77492200-77515000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr15:77492200-77516600	Weak transcription	Duodenum Mucosa	Duodenum
12	chr15:77492200-77516800	Weak transcription	Adipose Nuclei	Adipose
13	chr15:77492200-77516800	Weak transcription	NHLF	lung
14	chr15:77492200-77527400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr15:77492200-77527800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr15:77492200-77527800	Weak transcription	Fetal Muscle Trunk	muscle
17	chr15:77492200-77528200	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr15:77492400-77516600	Weak transcription	Fetal Intestine Small	intestine
19	chr15:77492400-77516800	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr15:77492400-77516800	Weak transcription	Primary B cells from cord blood	blood
21	chr15:77492400-77544000	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr15:77492600-77516600	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr15:77492600-77516800	Weak transcription	Aorta	Aorta
24	chr15:77492800-77516400	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr15:77494600-77516600	Weak transcription	Brain Substantia Nigra	brain
26	chr15:77494800-77514200	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr15:77494800-77518800	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr15:77500000-77515600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr15:77500200-77512400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr15:77500400-77515400	Weak transcription	Fetal Lung	lung
31	chr15:77500400-77516000	Weak transcription	Dnd41	blood
32	chr15:77500400-77516800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr15:77500800-77511800	Weak transcription	Fetal Muscle Leg	muscle
34	chr15:77501000-77523000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr15:77501000-77527400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr15:77501800-77515400	Weak transcription	Primary T cells from cord blood	blood
37	chr15:77501800-77516000	Weak transcription	HSMM	muscle
38	chr15:77502200-77524800	Weak transcription	Osteobl	bone
39	chr15:77502400-77515800	Weak transcription	HUVEC	blood vessel
40	chr15:77503600-77512200	Weak transcription	NHDF-Ad	bronchial
41	chr15:77505800-77559400	Weak transcription	Psoas Muscle	Psoas
42	chr15:77506200-77509800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr15:77507400-77516400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr15:77507400-77516600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr15:77507600-77528200	Weak transcription	Left Ventricle	heart
46	chr15:77508000-77509600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr15:77508000-77543400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr15:77509200-77510200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr15:77509200-77510400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr15:77509200-77511000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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