Variant report

Variant	rs62010361
Chromosome Location	chr15:78623756-78623757
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:78623127..78625946-chr15:78627130..78629758,2	MCF-7	breast:
2	chr15:78617234..78619818-chr15:78622229..78624216,2	MCF-7	breast:
3	chr15:78622789..78627489-chr15:78629672..78633928,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166426	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16969725	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3784333	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4886568	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55706802	0.87[AFR][1000 genomes]
rs8026332	0.82[ASN][1000 genomes]
rs8037145	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
3	nsv833063	chr15:78605215-78754945	Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1052910	chr15:78608637-78707049	Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78617600-78623800	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr15:78618200-78633400	Weak transcription	Right Atrium	heart
3	chr15:78622600-78624000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:78622600-78624000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr15:78622600-78624200	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr15:78623600-78623800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr15:78623600-78623800	Enhancers	Placenta Amnion	Placenta Amnion
8	chr15:78623600-78624000	Bivalent Enhancer	Fetal Muscle Leg	muscle
9	chr15:78623600-78624200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr15:78623600-78624200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr15:78623600-78624200	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr15:78623600-78624200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr15:78623600-78624200	Enhancers	Adipose Nuclei	Adipose
14	chr15:78623600-78624200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
15	chr15:78623600-78624200	Enhancers	Fetal Intestine Large	intestine
16	chr15:78623600-78624200	Enhancers	Fetal Intestine Small	intestine
17	chr15:78623600-78624200	Enhancers	Fetal Stomach	stomach
18	chr15:78623600-78624400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
19	chr15:78623600-78624400	Enhancers	H1 Cell Line	embryonic stem cell
20	chr15:78623600-78624400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr15:78623600-78624400	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr15:78623600-78624400	Enhancers	Fetal Muscle Trunk	muscle
23	chr15:78623600-78624600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr15:78623600-78624600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr15:78623600-78624600	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr15:78623600-78624600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr15:78623600-78625600	Enhancers	Placenta	Placenta

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