Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12148725	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2460612	0.88[ASN][1000 genomes]
rs28438893	0.88[ASN][1000 genomes]
rs475496	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs485510	0.88[ASN][1000 genomes]
rs534869	0.88[ASN][1000 genomes]
rs543335	0.88[ASN][1000 genomes]
rs554548	0.88[ASN][1000 genomes]
rs59306873	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62006003	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62023565	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62023567	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62023582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62023583	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62023585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62023588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62024809	1.00[AMR][1000 genomes]
rs62024810	1.00[AMR][1000 genomes]
rs62026071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs906498	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs969907	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3343986	chr15:53284440-53571936	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1037630	chr15:53324645-53708925	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1051634	chr15:53459129-53565627	Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3385784	chr15:53492461-53521900	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53503600-53515800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr15:53510000-53515600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr15:53512200-53519800	Weak transcription	HepG2	liver
4	chr15:53514200-53514600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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