Variant report

Variant	rs62027004
Chromosome Location	chr15:76553890-76553891
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11854972	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11856470	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11857880	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2469208	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55831300	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55923544	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs56220133	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56233972	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56313024	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59691037	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60261704	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027007	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027010	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027014	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027016	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027019	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027059	0.84[EUR][1000 genomes]
rs62028374	1.00[AFR][1000 genomes]
rs62030172	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030183	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030184	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030186	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030187	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030191	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030230	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62030234	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030240	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6495195	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7167004	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7175022	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72736846	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72736862	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72736888	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72736892	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8042654	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833057	chr15:76367848-76585868	ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv527608	chr15:76530267-76562738	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76510200-76555400	Weak transcription	Psoas Muscle	Psoas
2	chr15:76510400-76555000	Weak transcription	NH-A	brain
3	chr15:76513200-76559400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr15:76517400-76559400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr15:76522400-76554400	Weak transcription	Fetal Heart	heart
6	chr15:76535600-76555200	Weak transcription	Brain Substantia Nigra	brain
7	chr15:76539000-76555600	Weak transcription	HUVEC	blood vessel
8	chr15:76545400-76555400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr15:76546200-76554800	Strong transcription	Hela-S3	cervix
10	chr15:76546200-76555200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr15:76546200-76556000	Strong transcription	A549	lung
12	chr15:76546800-76554200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr15:76546800-76558200	Weak transcription	Brain Angular Gyrus	brain
14	chr15:76547000-76554600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr15:76548000-76555000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr15:76549000-76555200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr15:76549400-76554600	Strong transcription	Duodenum Smooth Muscle	Duodenum
18	chr15:76549400-76555200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr15:76549600-76555000	Weak transcription	Fetal Kidney	kidney
20	chr15:76550400-76554200	Strong transcription	Fetal Lung	lung
21	chr15:76550400-76563000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr15:76550600-76554000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr15:76550600-76554000	Strong transcription	Aorta	Aorta
24	chr15:76550600-76554000	Strong transcription	Brain Anterior Caudate	brain
25	chr15:76550600-76554000	Strong transcription	Colonic Mucosa	Colon
26	chr15:76550600-76554000	Strong transcription	Gastric	stomach
27	chr15:76550600-76554000	Strong transcription	Sigmoid Colon	Sigmoid Colon
28	chr15:76550600-76554200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr15:76550600-76554200	ZNF genes & repeats	Lung	lung
30	chr15:76550600-76554200	Strong transcription	Pancreas	Pancrea
31	chr15:76550600-76554400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr15:76550600-76554400	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr15:76550600-76554600	Strong transcription	H1 Cell Line	embryonic stem cell
34	chr15:76550600-76554600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr15:76550600-76554600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr15:76550600-76554600	Strong transcription	Ovary	ovary
37	chr15:76550600-76554800	Strong transcription	Primary T helper cells fromperipheralblood	blood
38	chr15:76550600-76555000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr15:76550600-76555200	Strong transcription	Adipose Nuclei	Adipose
40	chr15:76550600-76555200	Strong transcription	HSMM	muscle
41	chr15:76550600-76555400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr15:76550600-76555400	Strong transcription	Primary T helper cells PMA-I stimulated	--
43	chr15:76550600-76555400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr15:76550600-76555400	Strong transcription	Rectal Mucosa Donor 29	rectum
45	chr15:76550600-76555800	Strong transcription	HepG2	liver
46	chr15:76550600-76557400	Strong transcription	Stomach Smooth Muscle	stomach
47	chr15:76550600-76559200	ZNF genes & repeats	Fetal Stomach	stomach
48	chr15:76550600-76560400	ZNF genes & repeats	Fetal Intestine Large	intestine
49	chr15:76550600-76562600	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
50	chr15:76550600-76563000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood

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