Variant report

Variant	rs62027051
Chromosome Location	chr15:76603679-76603680
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:22)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:22 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:76603369..76604011-chr4:79859804..79860621,2	Hela-S3	cervix:
2	chr15:76603268..76604108-chr17:41465695..41466359,2	Hela-S3	cervix:
3	chr15:76603390..76603920-chr7:104653783..104654640,2	Hela-S3	cervix:
4	chr15:76603595..76604138-chr2:54342354..54343006,2	HCT-116	colon:
5	chr11:46867369..46868150-chr15:76603245..76603939,2	Hela-S3	cervix:
6	chr15:76582923..76594852-chr15:76601949..76606997,18	MCF-7	breast:
7	chr15:76603454..76604019-chr16:67969707..67970408,2	Hela-S3	cervix:
8	chr15:76517181..76519721-chr15:76602211..76604425,2	K562	blood:
9	chr15:76577736..76580355-chr15:76602966..76605157,2	MCF-7	breast:
10	chr1:32403461..32404101-chr15:76603301..76604035,2	Hela-S3	cervix:
11	chr15:76603148..76604121-chr2:97001077..97001691,2	Hela-S3	cervix:
12	chr15:76602419..76607116-chr15:76626572..76631104,6	MCF-7	breast:
13	chr15:76603349..76604082-chr5:31532161..31532828,2	Hela-S3	cervix:
14	chr15:76601574..76614388-chr15:76623703..76634730,38	K562	blood:
15	chr15:76602919..76604847-chr15:77361875..77364736,2	K562	blood:
16	chr15:76584959..76587924-chr15:76602984..76605259,2	K562	blood:
17	chr15:76603254..76604196-chr17:34900638..34901493,2	Hela-S3	cervix:
18	chr15:76603407..76604071-chr16:2204657..2205287,2	Hela-S3	cervix:
19	chr15:76600511..76607655-chr15:76613791..76629933,32	MCF-7	breast:
20	chr15:76584135..76596152-chr15:76600630..76606670,15	MCF-7	breast:
21	chr15:76603305..76604106-chr2:100105951..100106601,2	Hela-S3	cervix:
22	chr15:76601310..76610583-chr15:76618699..76634643,40	K562	blood:

No data

Variant related genes	Relation type
ENSG00000140391	Chromatin interaction
ENSG00000005483	Chromatin interaction
ENSG00000184007	Chromatin interaction
ENSG00000205220	Chromatin interaction
ENSG00000163291	Chromatin interaction
ENSG00000113360	Chromatin interaction
ENSG00000188825	Chromatin interaction
ENSG00000206630	Chromatin interaction
ENSG00000259514	Chromatin interaction
ENSG00000175216	Chromatin interaction
ENSG00000121152	Chromatin interaction
ENSG00000082213	Chromatin interaction
ENSG00000261884	Chromatin interaction
ENSG00000247675	Chromatin interaction
ENSG00000005955	Chromatin interaction
ENSG00000159556	Chromatin interaction
ENSG00000170634	Chromatin interaction
ENSG00000140374	Chromatin interaction
ENSG00000135945	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11631423	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11633405	0.85[AFR][1000 genomes]
rs11634060	0.86[AFR][1000 genomes]
rs11636278	0.85[AFR][1000 genomes]
rs12443449	0.85[AFR][1000 genomes]
rs2404971	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3915459	0.86[AFR][1000 genomes]
rs3915460	0.86[AFR][1000 genomes]
rs3927264	0.85[AFR][1000 genomes]
rs3958426	0.85[AFR][1000 genomes]
rs3991792	0.85[AFR][1000 genomes]
rs3991793	0.83[AFR][1000 genomes]
rs3991794	0.85[AFR][1000 genomes]
rs4886486	0.85[AFR][1000 genomes]
rs4886487	0.85[AFR][1000 genomes]
rs4886793	0.82[ASN][1000 genomes]
rs56074065	0.85[ASN][1000 genomes]
rs56372945	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56737606	0.81[AFR][1000 genomes]
rs57217518	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59467462	0.95[ASN][1000 genomes]
rs60929076	0.85[ASN][1000 genomes]
rs61018254	0.86[AFR][1000 genomes]
rs62027018	0.83[AFR][1000 genomes]
rs62027047	0.85[AFR][1000 genomes]
rs62027048	0.83[AFR][1000 genomes]
rs62027053	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027055	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7177370	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7179750	0.85[AFR][1000 genomes]
rs7180462	0.85[AFR][1000 genomes]
rs8029637	0.83[AFR][1000 genomes]
rs8030454	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520069	chr15:76602212-76609181	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76602000-76604000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:76602000-76604000	Active TSS	HUES6 Cell Line	embryonic stem cell
3	chr15:76602000-76604200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr15:76602000-76604200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr15:76602200-76604000	Active TSS	HSMMtube	muscle
6	chr15:76602200-76604200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr15:76602200-76604200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
8	chr15:76602200-76604400	Active TSS	Stomach Smooth Muscle	stomach
9	chr15:76602400-76604000	Active TSS	H1 Cell Line	embryonic stem cell
10	chr15:76602400-76604000	Active TSS	HUES48 Cell Line	embryonic stem cell
11	chr15:76602400-76604000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr15:76602400-76604000	Active TSS	A549	lung
13	chr15:76602400-76604200	Active TSS	Breast Myoepithelial Primary Cells	Breast
14	chr15:76602400-76604200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr15:76602400-76604400	Active TSS	ES-I3 Cell Line	embryonic stem cell
16	chr15:76602400-76604400	Active TSS	Rectal Mucosa Donor 29	rectum
17	chr15:76602400-76604400	Active TSS	NHLF	lung
18	chr15:76602600-76603800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr15:76602600-76603800	Active TSS	Fetal Brain Male	brain
20	chr15:76602600-76604000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr15:76602600-76604000	Active TSS	Fetal Heart	heart
22	chr15:76602600-76604000	Active TSS	Skeletal Muscle Male	skeletal muscle
23	chr15:76602600-76604000	Active TSS	NHDF-Ad	bronchial
24	chr15:76602600-76604200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr15:76602600-76604200	Active TSS	Fetal Intestine Small	intestine
26	chr15:76602600-76604200	Active TSS	Pancreatic Islets	Pancreatic Islet
27	chr15:76602600-76604200	Active TSS	Fetal Stomach	stomach
28	chr15:76602600-76604200	Active TSS	Lung	lung
29	chr15:76602600-76604200	Active TSS	Ovary	ovary
30	chr15:76602600-76604200	Active TSS	Psoas Muscle	Psoas
31	chr15:76602600-76604200	Active TSS	Right Atrium	heart
32	chr15:76602600-76604200	Active TSS	Right Ventricle	heart
33	chr15:76602600-76604200	Active TSS	Sigmoid Colon	Sigmoid Colon
34	chr15:76602600-76604200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
35	chr15:76602600-76604400	Active TSS	Fetal Intestine Large	intestine
36	chr15:76602600-76604400	Active TSS	Rectal Smooth Muscle	rectum
37	chr15:76602800-76603800	Active TSS	Fetal Muscle Trunk	muscle
38	chr15:76602800-76603800	Active TSS	Stomach Mucosa	stomach
39	chr15:76602800-76604000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr15:76602800-76604000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr15:76602800-76604000	Active TSS	Fetal Muscle Leg	muscle
42	chr15:76602800-76604000	Active TSS	Placenta	Placenta
43	chr15:76602800-76604000	Active TSS	Fetal Thymus	thymus
44	chr15:76602800-76604000	Active TSS	GM12878-XiMat	blood
45	chr15:76602800-76604000	Active TSS	HSMM	muscle
46	chr15:76602800-76604200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr15:76602800-76604200	Active TSS	H9 Cell Line	embryonic stem cell
48	chr15:76602800-76604200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
49	chr15:76602800-76604200	Flanking Active TSS	Primary hematopoietic stem cells	blood
50	chr15:76602800-76604200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin

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