Variant report

Variant	rs62027055
Chromosome Location	chr15:76604973-76604974
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:49)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:49 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SP1	chr15:76604824-76606601	A549	lung:	n/a	n/a
2	MAX	chr15:76604763-76606536	A549	lung:	n/a	n/a
3	NR2F2	chr15:76604761-76605619	MCF-7	breast:	n/a	n/a
4	ATF3	chr15:76604945-76605665	A549	lung:	n/a	n/a
5	ETS1	chr15:76604931-76605673	A549	lung:	n/a	n/a
6	MAX	chr15:76604694-76606678	A549	lung:	n/a	n/a
7	NR2F2	chr15:76604937-76605618	MCF-7	breast:	n/a	n/a
8	POLR2A	chr15:76604876-76605374	HepG2	liver:	n/a	n/a
9	REST	chr15:76604602-76606522	A549	lung:	n/a	n/a
10	TCF7L2	chr15:76604908-76605518	MCF-7	breast:	n/a	n/a
11	GTF2F1	chr15:76604957-76605693	Hela-S3	cervix:	n/a	n/a
12	JUND	chr15:76604922-76605604	T-47D	breast:	n/a	n/a
13	POLR2A	chr15:76604762-76605719	Hela-S3	cervix:	n/a	n/a
14	JUND	chr15:76604945-76605673	T-47D	breast:	n/a	n/a
15	FOSL2	chr15:76604508-76606502	A549	lung:	n/a	n/a
16	GATA3	chr15:76604741-76605705	MCF-7	breast:	n/a	n/a
17	EP300	chr15:76604854-76605698	A549	lung:	n/a	n/a
18	GATA3	chr15:76604835-76605710	MCF-7	breast:	n/a	n/a
19	E2F6	chr15:76604763-76605554	A549	lung:	n/a	n/a
20	FOXA2	chr15:76604930-76605757	A549	lung:	n/a	n/a
21	ZKSCAN1	chr15:76604914-76605585	Hela-S3	cervix:	n/a	n/a
22	SMARCC1	chr15:76604769-76606435	Hela-S3	cervix:	n/a	n/a
23	MAFK	chr15:76604888-76605530	Hela-S3	cervix:	n/a	n/a
24	JUND	chr15:76604814-76605556	Hela-S3	cervix:	n/a	n/a
25	YY1	chr15:76604884-76605589	A549	lung:	n/a	n/a
26	GATA3	chr15:76604675-76605578	T-47D	breast:	n/a	n/a
27	TEAD4	chr15:76604965-76605681	A549	lung:	n/a	n/a
28	TFAP2C	chr15:76604746-76606547	Hela-S3	cervix:	n/a	chr15:76605377-76605392
29	MYC	chr15:76604964-76605545	Hela-S3	cervix:	n/a	n/a
30	SIN3AK20	chr15:76604543-76605732	MCF-7	breast:	n/a	n/a
31	GATA3	chr15:76604848-76605491	MCF-7	breast:	n/a	n/a
32	TCF12	chr15:76604657-76606769	A549	lung:	n/a	n/a
33	MAX	chr15:76604849-76605645	MCF-7	breast:	n/a	n/a
34	TBL1XR1	chr15:76604905-76605270	K562	blood:	n/a	n/a
35	MXI1	chr15:76604909-76605523	HepG2	liver:	n/a	n/a
36	GATA3	chr15:76604804-76605563	T-47D	breast:	n/a	n/a
37	MAX	chr15:76604934-76605476	K562	blood:	n/a	n/a
38	BCL3	chr15:76604707-76606149	A549	lung:	n/a	n/a
39	EP300	chr15:76604802-76605869	A549	lung:	n/a	n/a
40	JUND	chr15:76604899-76605614	A549	lung:	n/a	n/a
41	BCL3	chr15:76604842-76605682	A549	lung:	n/a	n/a
42	MAX	chr15:76604917-76605513	MCF-7	breast:	n/a	n/a
43	GATA3	chr15:76604731-76605811	A549	lung:	n/a	n/a
44	FOXA2	chr15:76604924-76605706	A549	lung:	n/a	n/a
45	SP1	chr15:76604595-76605767	A549	lung:	n/a	n/a
46	ZBTB33	chr15:76604964-76605655	A549	lung:	n/a	n/a
47	RCOR1	chr15:76604893-76605582	Hela-S3	cervix:	n/a	n/a
48	SMC3	chr15:76604973-76605587	Hela-S3	cervix:	n/a	n/a
49	CEBPB	chr15:76604708-76606479	A549	lung:	n/a	n/a

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:76582923..76594852-chr15:76601949..76606997,18	MCF-7	breast:
2	chr15:76577736..76580355-chr15:76602966..76605157,2	MCF-7	breast:
3	chr15:76602419..76607116-chr15:76626572..76631104,6	MCF-7	breast:
4	chr15:76577457..76578224-chr15:76604901..76605413,2	MCF-7	breast:
5	chr15:76601574..76614388-chr15:76623703..76634730,38	K562	blood:
6	chr15:76604802..76606411-chr15:76677326..76680311,2	MCF-7	breast:
7	chr15:76584959..76587924-chr15:76602984..76605259,2	K562	blood:
8	chr15:76600511..76607655-chr15:76613791..76629933,32	MCF-7	breast:
9	chr15:76573739..76576523-chr15:76603684..76605605,3	K562	blood:
10	chr15:76584135..76596152-chr15:76600630..76606670,15	MCF-7	breast:
11	chr15:76601310..76610583-chr15:76618699..76634643,40	K562	blood:

No data

Variant related genes	Relation type
ETFA	TF binding region
ENSG00000140374	Chromatin interaction
ENSG00000140386	Chromatin interaction
ENSG00000259514	Chromatin interaction
ENSG00000159556	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11631423	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2404971	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4886793	0.82[ASN][1000 genomes]
rs56074065	0.85[ASN][1000 genomes]
rs56372945	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57217518	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59467462	0.95[ASN][1000 genomes]
rs60929076	0.85[ASN][1000 genomes]
rs62027051	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027053	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7177370	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520069	chr15:76602212-76609181	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76604200-76605000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:76604200-76605000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr15:76604200-76605000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr15:76604200-76605000	Weak transcription	Esophagus	oesophagus
5	chr15:76604200-76605000	Weak transcription	Spleen	Spleen
6	chr15:76604200-76605200	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr15:76604200-76605400	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr15:76604200-76605400	Enhancers	NH-A	brain
9	chr15:76604200-76605600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr15:76604200-76605600	Enhancers	Muscle Satellite Cultured Cells	--
11	chr15:76604200-76605600	Enhancers	HMEC	breast
12	chr15:76604200-76605600	Enhancers	HUVEC	blood vessel
13	chr15:76604200-76605600	Enhancers	NHDF-Ad	bronchial
14	chr15:76604200-76605800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr15:76604200-76606000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr15:76604200-76606000	Enhancers	Adipose Nuclei	Adipose
17	chr15:76604200-76606000	Enhancers	Stomach Mucosa	stomach
18	chr15:76604200-76606200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr15:76604200-76606400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr15:76604200-76606600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr15:76604200-76606600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr15:76604200-76608000	Enhancers	Placenta	Placenta
23	chr15:76604200-76608800	Weak transcription	Right Atrium	heart
24	chr15:76604200-76609000	Weak transcription	Primary T cells from cord blood	blood
25	chr15:76604200-76613600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr15:76604400-76605000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr15:76604400-76605000	Weak transcription	Brain Angular Gyrus	brain
28	chr15:76604400-76605000	Weak transcription	Brain Hippocampus Middle	brain
29	chr15:76604400-76606400	Flanking Active TSS	A549	lung
30	chr15:76604400-76606600	Flanking Active TSS	Hela-S3	cervix
31	chr15:76604400-76613600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr15:76604600-76605000	Enhancers	Duodenum Mucosa	Duodenum
33	chr15:76604600-76605400	Enhancers	Rectal Mucosa Donor 29	rectum
34	chr15:76604600-76605600	Flanking Active TSS	HepG2	liver
35	chr15:76604600-76605800	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr15:76604600-76606400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
37	chr15:76604600-76606400	Flanking Active TSS	K562	blood
38	chr15:76604800-76605000	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr15:76604800-76605000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
40	chr15:76604800-76605200	Flanking Active TSS	Liver	Liver
41	chr15:76604800-76605200	Enhancers	Gastric	stomach
42	chr15:76604800-76605200	Enhancers	Pancreas	Pancrea
43	chr15:76604800-76605400	Enhancers	Skeletal Muscle Female	skeletal muscle
44	chr15:76604800-76605600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr15:76604800-76605600	Flanking Active TSS	NHEK	skin
46	chr15:76604800-76606000	Enhancers	Left Ventricle	heart
47	chr15:76604800-76606400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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