Variant report

Variant	rs62027059
Chromosome Location	chr15:76622789-76622790
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:76601310..76610583-chr15:76618699..76634643,40	K562	blood:
2	chr15:76577336..76578067-chr15:76622322..76622937,2	MCF-7	breast:
3	chr15:76483018..76483722-chr15:76622624..76623279,3	K562	blood:
4	chr15:76482888..76484008-chr15:76622440..76623378,4	MCF-7	breast:
5	chr15:76600511..76607655-chr15:76613791..76629933,32	MCF-7	breast:
6	chr15:76527668..76528214-chr15:76622341..76622932,2	MCF-7	breast:
7	chr15:76478115..76478633-chr15:76622409..76623267,2	MCF-7	breast:
8	chr15:76622027..76624299-chr15:76626734..76629415,3	MCF-7	breast:
9	chr15:76588130..76590946-chr15:76621432..76623592,3	K562	blood:
10	chr15:76606947..76607819-chr15:76622249..76623219,2	MCF-7	breast:
11	chr15:76621795..76624110-chr15:76624805..76626514,2	MCF-7	breast:
12	chr15:76585050..76587534-chr15:76621476..76624273,2	MCF-7	breast:
13	chr15:76584595..76586481-chr15:76621378..76623249,2	MCF-7	breast:
14	chr15:76615021..76617967-chr15:76621271..76623960,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000169758	Chromatin interaction
ENSG00000140374	Chromatin interaction
ENSG00000159556	Chromatin interaction

rs_ID	r²[population]
rs11854972	0.86[EUR][1000 genomes]
rs11856244	1.00[AMR][1000 genomes]
rs11856470	0.86[EUR][1000 genomes]
rs11857880	0.86[EUR][1000 genomes]
rs2469208	0.86[EUR][1000 genomes]
rs55831300	0.86[AMR][1000 genomes]
rs55923544	0.89[AMR][1000 genomes]
rs56220133	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56233972	0.86[AMR][1000 genomes]
rs56313024	0.82[AMR][1000 genomes]
rs59691037	0.86[EUR][1000 genomes]
rs60261704	0.86[EUR][1000 genomes]
rs62027004	0.84[EUR][1000 genomes]
rs62027007	0.86[EUR][1000 genomes]
rs62027010	0.86[EUR][1000 genomes]
rs62027014	0.86[EUR][1000 genomes]
rs62027016	0.86[EUR][1000 genomes]
rs62027019	0.85[EUR][1000 genomes]
rs62027054	0.86[EUR][1000 genomes]
rs62028361	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62028382	0.81[AFR][1000 genomes]
rs62028384	0.81[AFR][1000 genomes]
rs62030162	1.00[AMR][1000 genomes]
rs62030163	1.00[AMR][1000 genomes]
rs62030169	1.00[AMR][1000 genomes]
rs62030170	1.00[AMR][1000 genomes]
rs62030172	0.86[AMR][1000 genomes]
rs62030183	0.86[AMR][1000 genomes]
rs62030184	0.86[AMR][1000 genomes]
rs62030186	0.86[AMR][1000 genomes]
rs62030187	0.86[AMR][1000 genomes]
rs62030191	0.86[AMR][1000 genomes]
rs62030230	0.86[AMR][1000 genomes]
rs62030234	0.86[AMR][1000 genomes]
rs62030240	0.86[AMR][1000 genomes]
rs6495195	0.82[AMR][1000 genomes]
rs7175022	0.86[AMR][1000 genomes]
rs72736846	0.86[AMR][1000 genomes]
rs72736862	0.86[AMR][1000 genomes]
rs72736888	0.86[EUR][1000 genomes]
rs72736892	0.86[EUR][1000 genomes]
rs73448114	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8042654	0.86[EUR][1000 genomes]

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76620600-76622800	Enhancers	Hela-S3	cervix
2	chr15:76621000-76625600	Weak transcription	K562	blood
3	chr15:76621000-76628000	Weak transcription	HSMMtube	muscle
4	chr15:76621800-76622800	Enhancers	Right Atrium	heart
5	chr15:76621800-76622800	Enhancers	HepG2	liver
6	chr15:76622400-76622800	Flanking Active TSS	Adipose Nuclei	Adipose
7	chr15:76622400-76622800	Enhancers	Liver	Liver
8	chr15:76622400-76622800	Bivalent Enhancer	Stomach Mucosa	stomach
9	chr15:76622400-76622800	Flanking Active TSS	A549	lung
10	chr15:76622600-76622800	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
11	chr15:76622600-76622800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr15:76622600-76622800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr15:76622600-76622800	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
14	chr15:76622600-76622800	Bivalent Enhancer	Thymus	Thymus

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